Brassica oleracea (wild cabbage): 106329231
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Entry
106329231 CDS
T04124
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106329231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
boe03036
]
106329231
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106329231
Chromatin remodeling factors
NuRD complex
106329231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHDII_SANT-like
SNF2-rel_dom
Chromo
DUF1087
ResIII
Motif
Other DBs
NCBI-GeneID:
106329231
NCBI-ProteinID:
XP_013623313
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All DBs
Position
C1:complement(3741369..3747001)
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AA seq
818 aa
AA seq
DB search
MIDIVSLAGRLRKRPDGRPVYTVDGSDEDADFDLNKDPTTEQIEGLAERDAVTPLTEMEK
ILDCQMRSMASNDLNSSDNVVKQYLVKWKGLSYLHCSWVPAQEFQKAYKFNPRLVFRVIR
FHSAMESMSKNGDDFVAIHPEWTTVDRVIDCRGEDGGKEYLVKFKELSYDECYWESESDI
STFLNEIQRFKDINSGCRTDKYVGHERSHEDLKQFDHTPEFITGSLNPYQLSGLNFLRFT
WSKRTLAVLDDEMGIGKTIQSIAFLASLFEENLAPYLVVAPVSTLRNWEREFATWAPHMN
VVMYCGNSQARTVIRDHEFYFPKGHNKMIGINGESKQERMKFDVILTSYEMINVDTEILK
PIKWKCMIVDEGHRLKNKNSELFNSLKPYTSEHRVLVRKNLDDESAVLEEAHAIENKSST
SNYLEDSLKDKYESQQVEELNVLGKRKRNHKQRFGEDALRYQEAEQTDGEAAGQGNQMAY
WPYNRRNPDNELACLEATSAHEEPKPIDGEAARQGNQMAKRPYNRRTRDTSEPIPLIEGG
GRYLKVLGFNELQRKRFIRTLERYGVGNYDWKEFVDPLKPRTYDEIKNYGLRFLKHIVED
KDVNSPTFSDGVPKEGLICHDLLAKIAVMMLIQKKVKLMKDHPTIPVFSDGIIHRFPALR
FRRGIFSNDERDRILLRAVSKNGVGKWSVIVTDIEFGIDQLVRKELNRPYTSFITANGNV
KETQIIVTDHIKRRFLILKEAIINEFAEEYYYGQKPSSLIRAQQNGLLDQPKNLFSDKFR
LLTERALHKFARKNISRSLRGYDEEEEEEEVTEVIMMD
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgatagatattgttagcttggctggtaggctacgtaaacggccagacggtagaccagtt
tacaccgtagatggttccgatgaggacgctgactttgatctaaacaaggatccgacaact
gaacagattgaaggacttgccgaaagagacgcggttactcctcttacagagatggagaag
attttggactgccaaatgcgttctatggcatctaacgatctgaattcatcagataatgtt
gtgaaacaatatcttgtgaagtggaaggggttatcttacctacactgctcttgggtgcct
gcgcaggagttccagaaggcctataagttcaaccctcgtttagtattcagggtgatcaga
tttcattctgcgatggagtcaatgagtaaaaatggagatgattttgttgccattcatcct
gagtggaccactgttgaccgggttatagattgccgcggagaagatgggggcaaggagtat
ctggtgaagttcaaagaactttcttatgatgagtgttattgggaatctgaatcagacata
tcaaccttcctaaacgaaatccagaggttcaaggatataaactctggttgtcgcacagat
aaatatgttggccatgagagaagtcatgaagatctcaaacagtttgatcatactcctgag
tttattacaggctcattgaatccgtatcagcttagtgggcttaactttttgcggtttaca
tggtcaaaacgaactcttgcagtccttgatgatgagatggggataggcaaaacaattcaa
agcattgcttttttagcttcgctttttgaggaaaacttggctccgtatttggtagttgct
cccgtttccactttgagaaactgggagagagaattcgccacatgggcaccacatatgaat
gtggttatgtactgtggtaattctcaagctcgtactgttattagagaccatgagttttac
ttcccaaaaggtcataacaagatgattggaatcaatggagaaagcaaacaggagaggatg
aagtttgatgtcattctcacgtcttatgagatgatcaacgtagacacagaaatcctaaaa
ccaatcaagtggaaatgcatgattgttgatgaaggccatcggttgaaaaataaaaattca
gagttgttcaattcgctgaagccgtatacgagtgaacatcgcgttctagttagaaagaac
ttggatgatgagtctgctgtcttagaggaagcacacgctatagaaaacaagtcttcaaca
tcaaactacttggaagattcgttaaaagacaagtatgaaagtcagcaagttgaggagctc
aatgttcttggaaagaggaagagaaaccacaaacagaggtttggcgaagatgcgcttcgt
tatcaagaagctgaacaaactgatggtgaagcagctggacagggaaaccagatggcttat
tggccttacaatagaaggaaccccgataatgaacttgcttgtttagaagcgacctctgct
catgaagaacccaaaccaattgatggtgaagcagctagacaaggaaaccaaatggctaaa
aggccttacaatagaaggactcgcgatacctctgagccaatacctttgatagaaggagga
gggagatatctcaaggtgttaggttttaacgagctgcaaagaaagagatttataaggacg
ttagagaggtacggagttggcaactatgactggaaggagtttgttgatcctttaaagccg
agaacctatgatgaaattaaaaattatggattacgtttcttgaagcacatcgtcgaagac
aaagatgttaattctccaaccttttcagatggagtccccaaagaaggactaatatgtcat
gatttacttgccaaaattgccgttatgatgttaattcaaaagaaggtgaaacttatgaaa
gaccatccaacaatccccgttttctctgacggcattatccataggttccctgcactaaga
ttcagaagaggaatattttcgaacgatgaacgtgacaggatcctgttgcgtgctgtttct
aagaacggggttggaaaatggtctgtcattgttactgacatagagtttgggatcgaccag
ctcgtgcgaaaagaattgaaccgcccttacacaagtttcattactgctaacggaaacgta
aaagaaacgcaaatcatagttactgatcatataaaaagacggtttctgattctgaaggaa
gcgataataaacgagtttgctgaagagtactactatggacaaaagccttcatctctgata
cgtgctcaacaaaatggtctactggatcaacccaagaatttgttttctgataagtttcga
ctattaactgaacgtgctttacataagtttgcgaggaagaacatttccagaagcttaagg
ggctatgacgaagaagaagaagaagaagaagtaactgaagtcattatgatggactga
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