KEGG   Bordetella sp. H567: AKI39_06670Help
Entry
AKI39_06670       CDS       T04979                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
boh  Bordetella sp. H567
Pathway
boh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:boh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AKI39_06670 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:boh03400]
    AKI39_06670 (ligD)
Enzymes [BR:boh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AKI39_06670 (ligD)
DNA repair and recombination proteins [BR:boh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AKI39_06670 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOB30445
UniProt: A0A1B2R0Y2
LinkDB All DBs
Position
complement(1475263..1477884)
Genome map
AA seq 873 aa AA seqDB search
MADTLAKYRQKRNFDVTSEPAGGGKANAAARAFVIQKHWATRLHYDFRLELDGAMKSWAV
PKGPSYDPAIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
DGHLKFDLMGAKMQGRWALVRLHGKENERQPPWLLIKDRDEFARPEQEFSVVDEMPDSVV
PLRAQRKKALARAADTGTAGKAPKTGKTAKTGKTEKAGKTEEDGPAHKLPGVARAVPATL
KPQLATLVDGVPPNVADWIYEVKFDGYRILARLDEDGPRLYTRNGHDWSRKMPHLVQVLG
KLKVPGTWIDGEIVVLADNGAPSFQALQNAFEGERTGDIVFYAFDLPFVAGRDLREEPLT
TRRALLEQLLGAAPDGPVRFSAAFDAAPQELVQSACKMGLEGIIAKRRNAGYVSRRSDSW
LKIKCARRQEFVIVGYTDPAGSRTGLGALLVAVHDEKGGLRYAGKVGTGFDTRGLNEMAK
KLQAIEIEERPLPHQADMPRRAHWVKPELVAEVSFGEWTQSGHIRHSVFRGLRTDKPARA
ITREAPVPAEAVAAAAGSDAETPPLQAPSRQAKAKKAATVKEKPGRLSNPDRVIDPSTGL
TKLDLARYYGLVAPLLLDHLKGRPVSLVRAPGGIQEPLFFQKHLEAAMPGVKALPQRLDP
GHPSLLEVPSDVAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGDGVKWPAMQQAA
GLVRVLLRELGMQCWLKTSGGKGLHVVVPLRKQYGWDAIKGFSEAIVRHLARTLPQMFVA
KSGPKNRVGKIYPDYLRNGFGATTVAAWSARARPGLGISVPIAWDELPELNSSAQWTISN
AHTRLDAGNAPWADYRPQSVAAAMKTLGYEPKG
NT seq 2622 nt NT seq  +upstreamnt  +downstreamnt
atggccgacacgcttgcgaagtaccggcagaagcgcaatttcgacgtcacgtcggaaccg
gccggtggcggcaaggccaatgccgcggcgcgcgccttcgtgatccagaagcactgggcc
acgcggctgcactacgatttcaggctggagctggatggcgccatgaaaagctgggcggtg
cccaagggccccagctacgaccccgccatcaagcgcatggcggtccaggtggaagaccat
cccatcgcctacaaccagttcgaaggcgagattccgaaaggccagtacggcgcgggcaag
gtcatcatctgggatgaaggtacctggcagccggtgggcgatccgcgcaaggggtatcgg
gatggccacctgaaattcgacctcatgggcgcgaagatgcagggccgctgggcgctggta
cggctgcatggcaaggaaaacgagcgtcagccgccgtggctcctgatcaaggaccgcgat
gaattcgcccgcccggaacaggaattcagcgtggtcgacgaaatgcccgacagcgtggtg
ccgctgcgtgcgcagcgcaagaaggcgctggcccgtgccgcggacacgggcacggccggg
aaggcgccgaagaccgggaagaccgcgaagaccgggaagaccgagaaggccgggaagacc
gaagaggatggtccggcgcacaaactgccgggcgtggcgcgtgcagtacccgccaccttg
aagccgcagctcgccacgctggtcgatggcgtgccgcccaatgtggccgactggatctac
gaggtgaagttcgacggctaccgcatcctggcccgcctggacgaggacgggccgcgcctc
tacacgcgcaatggccacgactggagccgcaagatgccgcacctggtccaggtgctgggc
aagctgaaggtgccgggaacctggatcgacggcgagatcgtcgtcctggccgacaacggc
gcgcccagcttccaggcgctgcagaatgccttcgaaggcgagcggacgggcgacatcgtt
ttctatgccttcgaccttcctttcgtggcgggccgagacctgcgcgaggaaccgctgacg
acgcgtcgcgcgctgctggagcagttgctcggcgccgcgccggacggccccgtgcgtttc
agcgcggccttcgacgcggccccgcaggagctggtgcaatccgcctgcaagatggggctg
gaagggatcatcgccaaacgccggaacgccggctacgtgtcgcggcgctcggatagctgg
ctcaagatcaaatgcgcacggcgacaggagttcgtcatcgtcggatataccgatcctgcc
ggcagccgcacgggcctgggtgcgctgctggtggcggtgcatgatgaaaaaggcggcttg
cgctatgccggcaaggtgggtaccggtttcgatacgcgcgggctgaacgagatggcgaag
aagctgcaggccatcgagatcgaggaacggcccctgccccaccaggccgatatgccgcgc
cgcgcgcattgggtcaagcccgagctggtggccgaagtctcgttcggtgaatggacacag
tcgggccacatacggcattccgtgttccgcggcctgcgcacggacaagccggcgcgcgcc
attacccgcgaagcgccggtacccgccgaggccgtcgccgccgccgcgggcagcgatgcg
gaaacgccacccctccaggccccctcgcggcaagccaaggcgaagaaggctgccacggtg
aaagaaaagccaggccgcctctccaatccggatcgcgtcatcgatccgtccaccggactc
accaagctcgatctcgcccgctactacggcctggtcgcgccgctgctgctggaccacctg
aaaggcaggcccgtatcgctggtgcgcgcgccgggcggcatacaggaacccttgttcttc
cagaagcacctggaagccgccatgccgggcgtcaaggcgctgccgcagcggctggacccg
ggccacccgtcgctgctggaagtgccttccgacgtggccatcatgtcggccgcgcagatg
aatgtggtcgaattccatacctggaatgccgtcaagagcgcgatcgacaagcccgatcgc
atgctcttcgatctggatcccggcgacggcgtgaaatggccggccatgcagcaggcggcc
ggactggtgcgcgtgctgttgcgggagctgggcatgcagtgctggctgaagaccagcggc
ggcaagggcctgcatgtggtggtcccgctgcgcaagcaatacggctgggacgccatcaag
gggttttccgaggccatcgtccgccacctggcccggacactgccccagatgttcgtggcg
aaaagcggccccaagaatcgggtgggcaaaatctacccggactacctgcgcaacggcttt
ggcgcgacgacggtggccgcgtggtcggcgcgcgcccgccccggcctgggtatctcggtg
cccatcgcctgggacgagctgccggaactcaacagcagcgcgcagtggacgatcagcaac
gcccacacccgcctggatgccggcaacgccccctgggcggactaccggccgcagtccgtg
gccgccgcgatgaagacgctgggctacgagccgaaaggctga

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