Rhodophyticola sp. CCM32: E2K80_05665
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Entry
E2K80_05665 CDS
T05925
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
boo
Rhodophyticola sp. CCM32
Pathway
boo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
boo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2K80_05665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boo03400
]
E2K80_05665 (mfd)
Enzymes [BR:
boo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2K80_05665 (mfd)
DNA repair and recombination proteins [BR:
boo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E2K80_05665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
AAA_16
AAA_30
RecG_dom3_C
UB2H
TniB
Motif
Other DBs
NCBI-ProteinID:
QBY00286
UniProt:
A0A4P7JAY0
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All DBs
Position
1160991..1164431
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AA seq
1146 aa
AA seq
DB search
MTRPSSHILTGGAPEGFDATLILQELARGSGAVCHVARDDKRLAAMATALAFFDPSVPVL
RFPGWDCLPYDRVSPNAEVAATRMATLASLAAGLSGRFILLTTLGAATQYLPPRALLRDA
AFVASVGGQIDEAALKSFLVRMGFAQSPTVTEPGDYAIRGGIIDVWPPGEEMPVRLDLFG
DVLDGARRFDPATQRTTDRLERVDLAPVSEVVLDEAAITRFRQNYRIEFGAAGSDDPLYE
AVSAGRKHAGVEHWLPFFHDQLETLFDYLPGATVTLEDHSDAQRQARWESIEDQYDTRRS
ALMQKARLESVYKPCPPGQLYLDDAAWGQAIAGHRVVQFSPLPQASGPGVTDAGGRVGRS
FAPERQQENISLFGALAGHIASERETSAVVIASWSDGARDRLSGLLEDQGVTGAVEIRDA
RDIKGKGSLTLAVWPLEEGFTGGGLTVISEQDVLGDRLIRPKRKTKRAENYLTEAQSLSP
GDLIVHVDHGVGRYNGLETVTAMGAPHECIALEYAGGDRLFLPVENIELLSRYGHEEGLL
DKLGGGAWQARKARLKDRIRQIADKLIRIAAERELRAAPVLEPPGDMWEAFAARFPYEET
EDQLSAIEDVMEDLARGRPMDRLVVGDVGFGKTEVAMRAGFAAAAAGLQVAIVAPTTLLA
RQHAKTFADRFRGFPINVKQLSRFVPAKQAADTRKGLADGSVDICIGTHALLAKGIRFQN
LGLLIIDEEQRFGVTHKERLKEMRSDVHVLTLSATPIPRTLQMSLSGVRDLSLIGTPPID
RLAIRTYVSEFDAVTLREGLLREHYRGGQSFYVVPRIQDLPEIESFLRDQVPEVSYVVAH
GQMAAGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMIIHRADRFGLAQLYQIRGR
VGRAKTRAYAYLTTKPRQKLTQTAEKRLRVLGSLDSLGAGFTIASQDLDIRGAGNIVGEE
QSGHVREVGFELYQSMLEEAIANIRSGAGEARLDEDGQWAPQINLGVPVLIPEAYVPDLD
VRLGLYRRLSHLTTKVELEGFAAELIDRFGKLPREVNTLLLVIRIKAKCKQAGIARLDAG
PKGATIQFHNDKFANPAGLVEFVEDQRGLAKIRDNKIVLRRDWTREADKIKGAFSIAQDL
ARKINT
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaccctccagccatattctgaccggcggcgcccccgagggctttgacgccaca
ttgatcctgcaagagcttgcccggggcagtggcgcggtctgccatgtggcccgcgatgac
aagcgcctggccgcgatggccacggcgctggcgttttttgacccttccgtgcctgtcctg
cggtttcccgggtgggattgtctgccctatgaccgggtctcccccaatgcagaggttgcc
gcgacccggatggcgacgcttgccagtcttgcggccgggctgtcggggcggtttattcta
ctgaccacattgggcgcggccacccaatacctgccgccccgcgcgcttctgcgcgatgcc
gcctttgtggccagtgtcggcgggcagatcgacgaggccgcgctgaaatcctttctggtg
cgcatgggctttgcacaaagccccacggtgacggaacccggcgattatgcgatccgcggt
ggcatcattgatgtctggcccccgggggaggagatgcccgtgcggctggatctgttcggc
gatgtgctggacggggcccgccggtttgacccggccacgcaacggacaaccgaccggctg
gagcgtgtggacctggccccggtatccgaggtggtgctagatgaggccgcgatcacccgg
ttccggcaaaattatcggatcgaatttggcgccgccggcagtgatgatccgctttacgag
gcggtcagcgcgggccggaaacatgccggcgtggaacattggctgccgtttttccacgat
cagctggaaaccctgttcgattatctgccgggcgccacggtcacgctggaggatcacagc
gatgcgcagcgtcaggcgcggtgggaaagtattgaagatcaatatgatacacggcgttct
gccctgatgcagaaagcccggctggagtcggtctataaaccctgtccgcccggtcagctt
tatctggatgacgccgcctgggggcaggcgattgccgggcacagggttgtgcagttttcc
cccctgccacaggccagcgggccgggtgtgaccgatgcgggcggccgggtggggcgcagt
ttcgcgccggaacgtcagcaggaaaatatcagtcttttcggggctttggcgggtcatatt
gcatcagaacgtgaaaccagcgccgttgtcattgcctcctggtccgatggcgcgcgggac
cggctttcggggttgctggaagatcagggtgtcaccggcgcggtcgagatcagggatgca
agggacatcaagggcaagggcagtctgaccctcgcggtctggccgctggaagaggggttt
accggcggcgggctgacggtcatctcggaacaggatgtgctgggtgaccggctgatccgc
ccgaaacggaagaccaaacgcgccgagaattacctgaccgaggcgcaatctctcagcccc
ggtgatctgattgtgcatgtggatcatggggttggccgctataacgggcttgaaaccgtc
accgccatgggcgcgccccatgaatgtatcgcgctggaatatgccgggggcgaccggctg
ttcctgccggtggaaaatatcgaactgctcagccgttatggccatgaggaagggctgctc
gacaagctgggcggcggcgcctggcaggcccggaaagccaggctcaaagaccgtatccgg
cagatcgccgacaagctgatccgcatcgcggcagagcgggaattgcgcgcggccccggtt
ctggaaccgcccggcgatatgtgggaggcatttgccgcgcgcttcccctatgaggaaacc
gaggatcaactgagtgccatcgaggatgtgatggaagatctggcccggggccgcccgatg
gaccggctggtggtgggcgatgtgggctttggcaaaaccgaggtggccatgcgcgcaggt
ttcgccgccgccgctgccgggcttcaggttgccattgtcgcgcccaccacattgctggcc
cggcagcacgccaagaccttcgccgaccggtttcgcgggtttcccataaatgtcaaacag
ttgtcgcgctttgttccggcaaaacaggccgcagatacgcgcaagggtctggccgatggc
agcgtcgatatctgcatcggcacccatgccttgctggccaagggcatccggttccagaat
ctgggcctgctgatcattgacgaggaacagcgctttggcgtcacccataaggagcgcctg
aaagagatgcgctcggacgtgcatgttctgaccctctcggccacgccgatcccgcgcaca
ttgcagatgtcgctttcgggcgtgcgtgatctcagcctgatcggcacgccgcccatcgac
cggctggcgatccgcacctatgtcagcgaattcgatgcggtcaccctgcgcgaggggctg
ctcagggagcattatcgcggcgggcagagcttctatgtggtgccccgcattcaggacctg
cccgagatcgagagcttcctgcgcgatcaggtgcccgaagtctcttatgtggtggcccat
ggccagatggcggcgggcgagctggatgaccggatgaatgcgttttacgatggcaaatac
gatgtcctgctggccacgaccatcgtcgaatccggtatcgacattcccaccgccaacacg
atgatcatccaccgggccgaccggttcggccttgcgcagctttaccagatccgcgggcgg
gtgggccgggccaagacccgtgcctatgcctatctgaccaccaaaccccgccagaaactg
acccagacggccgaaaaacggctgcgggtcctgggcagtctcgacagtctgggggccggc
ttcaccatcgccagccaggatctcgatatccgcggcgccggcaatatcgtgggggaggaa
caatcgggccatgtgcgcgaggtcgggtttgagctttatcaatccatgctggaagaggcg
attgccaatatccgctccggggccggggaggcacggctggatgaagacggccaatgggcg
ccgcagatcaatctgggtgtgccggtcctgatccccgaggcctatgtgcctgatctggat
gtgcggcttggcctctaccggcggctgtcacatctgaccacaaaggtggaactggaaggc
tttgccgccgagctgatcgaccgtttcggcaaattgccgcgcgaggtgaacaccctgctt
ctggtcatccgcatcaaggcgaaatgcaaacaggcggggatcgcgcggctggatgcgggg
cccaaaggggcaacgatccagttccataacgacaaattcgccaatcccgccggtctggtg
gaatttgtcgaggatcagcgcgggctggccaaaatccgcgacaacaagattgtcctgcgc
cgggactggacgcgcgaagccgacaagatcaagggcgcattctcaatcgcccaggatctg
gcgcgcaagataaacacataa
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