KEGG   Bosea sp. PAMC 26642: AXW83_24315Help
Entry
AXW83_24315       CDS       T04264                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bop  Bosea sp. PAMC 26642
Pathway
bop03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bop00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AXW83_24315
Enzymes [BR:bop01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AXW83_24315
DNA repair and recombination proteins [BR:bop03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AXW83_24315
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AMJ63004
UniProt: A0A126P1J3
LinkDB All DBs
Position
complement(5095121..5097796)
Genome map
AA seq 891 aa AA seqDB search
MPRRCALEKLKAYRQKRDFEKTKEPDGEASVAASNRLRFVIQKHDATRLHYDLRLELDGV
FRSWAVTKGPSLDPGDKRLAVEVEDHPLPYGDFEGTIPKGQYGGGTVQLWDRGYWEAEGK
LSPEKQLEKGELKFVLAGERLHGSFVLVRMRHDRNGGKRTNWLLIKHRDEHAVESHGDAV
LADDKSVASGRSMATIAAGKGRSPKPFMLDDDILAPDAEWDSQKGLAANKRHEPTKPASR
SKSPSPKAPASHKSVASVALPAFIAPQLCRSIERPASGTDWVHEIKFDGYRIQMRIDAGK
VTLKTRNGLDWTQKFGAIAKAAKGLPDAIIDGEIVALDSHGSPDFAALQAALSENKTDDL
VFFAFDMLFDKDTDLRERPLLQRKEQLKAYLEDHADGVVLRYVEHFETGGDAVLKSACKL
SLEGIVSKAVDAPYISGRSDTWTKSKCRAGHEVVIGGWSTTEGKFRSLLVGVNRGSHFVY
VGRVGTGYSAAKVDALLPKLKAVAAEASPFTGVGAPKREPGVTWLKPELVAEIEFAGWTG
DGMVRQAAFKGLREDKPADEVETELPADPAETQTPEPRPARARGRGGRADVMGVGISHPN
KPLWPDAEDGKPVSKQDLAEYFGAVGDWMLPHIKGRPCSLVRAPDGIGGEMFFQRHAGMG
TSNLFELVRVFGDKKPYLQIDRIEALAAAAQVGGIELHPWNCLPGDPETPGRLVFDLDPG
PGVTFGDVIDAAKQMRERLEALGLVSFCKTTGGKGLHVVTPLASGKRATVDWPAAKDFAR
RVCAELASEEPARYVINMAKRLRNGRIFLDYLRNDRMATAVAPLSPRARPGAHASMPLTW
SQVKADLDPSRFTVRTLPGVLRKTKAWEGYDDAAGSIADAIKKLGKRSEAA
NT seq 2676 nt NT seq  +upstreamnt  +downstreamnt
gtgccgcggaggtgtgcgttggaaaagctgaaggcgtatcgccaaaagcgcgatttcgag
aagaccaaggagcccgatggcgaagcctccgtcgccgcgtcgaaccgcctgcggttcgtg
atccagaagcatgacgcaacccgtctgcactacgatctgcggctggaactcgatggcgtc
tttcgctcctgggctgtgaccaagggaccctcgctcgatcccggcgacaagcggttggcc
gtcgaggtggaggatcacccgctgccctacggcgatttcgaaggcaccatcccgaagggg
cagtatggcggcggaacggtccagctctgggatcgtggctactgggaagccgaaggcaag
ctcagccctgaaaagcaacttgagaaaggcgagctcaaattcgtcctcgccggggagcgc
ctgcacggcagcttcgtcctcgtccgcatgcgccacgatcgcaatggcggtaagcgaacc
aactggcttcttatcaagcaccgcgacgaacatgccgtcgaaagccatggcgacgcggtc
ctggccgacgacaagtcggtggcctcaggccgtagcatggcaacgatcgctgcaggcaag
ggacgctcgcccaagcctttcatgctggacgacgatattctcgcccctgacgcggagtgg
gacagtcagaaaggactggcagcgaacaagaggcacgaaccgactaagcccgcgtctagg
tcgaaatctccgtcgcctaaggcgcctgcctcccacaagtccgtcgcttcggttgccctt
ccagccttcatcgcgccacaactctgtcggagcatcgagcgtcccgccagcggcaccgat
tgggtccacgagatcaaattcgacggctatcgcatccagatgcggatcgacgccggcaag
gtgaccttgaaaacgcggaatggtctcgactggacccaaaagttcggcgcgatcgcgaag
gcggccaagggtctccctgacgccatcattgatggcgagatcgtggcgctcgacagtcac
ggctcgccggattttgcagcgcttcaggccgccctttccgagaataagactgatgatctg
gtcttcttcgccttcgatatgctgttcgacaaggataccgatctgcgcgagcgacctctg
ctgcaacgaaaagagcagttgaaggcgtatctggaggatcatgctgacggtgtcgtgctg
cgctatgtcgagcatttcgagacaggtggcgatgcggtcctgaaatcggcctgcaagctg
tccctggaaggcatcgtctccaaggccgtcgatgcaccctacatttccggtcgaagtgac
acatggacgaagtccaagtgccgggctggccatgaggtcgtgatcggaggctggtccaca
accgaaggcaagttcagatcgctcctcgtcggcgtcaaccggggctcccatttcgtctat
gtcggccgtgtcgggaccggctacagcgcggcgaaggtggatgcattgctgccgaagctc
aaggccgtcgccgcggaggcatcgcccttcaccggcgtaggcgcgcccaagcgtgagccg
ggcgtgacctggctgaagccggagctggtcgccgagatcgagttcgccggctggaccggt
gacggcatggtccgccaggcggcgttcaaggggctgcgcgaggacaagccggcggacgag
gtcgagaccgaattgcctgccgatccggcagagacgcagacgcctgagcccaggcccgct
cgcgctcgcggacgcggtggcagggccgatgtcatgggcgttggcatcagccaccccaac
aagccgctgtggcccgatgccgaagatggcaaacccgtctccaagcaggatctggccgag
tatttcggagcggtcggcgactggatgctgccgcatatcaaaggcaggccctgctccctc
gttcgcgcacctgatgggatcggcggcgaaatgtttttccagcgccatgccggcatgggg
acgtcgaacctgttcgagctcgtccgggtcttcggcgacaagaagccctatctccagatc
gaccggatcgaggcgctggctgcggccgcccaagtcgggggtatcgaactccacccctgg
aactgcctccccggcgatccggagacgcccgggcgtctcgtcttcgatctggatcccggg
cctggcgtgaccttcggcgatgtgatcgacgctgccaagcagatgcgtgagcggctcgag
gcgctgggcctcgtcagcttctgcaagaccacgggcggcaagggccttcacgtcgtgacg
cctttggcgtcgggcaagcgcgccaccgtcgattggccggcggccaaggacttcgcacgg
cgggtctgtgccgagctagcaagcgaggagccggcgcgctatgtcatcaacatggccaag
cggcttcgaaacggccgcatctttctcgactatctccgcaacgaccgaatggcgaccgcc
gtcgcacccttgtcgcccagggcgcgtccaggcgcccatgcgtcgatgccgctcacctgg
tcgcaagtgaaggccgatctcgatccgagccgcttcaccgtcaggaccctgcctggcgtg
ctgaggaagaccaaggcttgggagggctacgacgacgcggcggggtcgatcgccgacgcc
atcaagaagctcggcaagcgtagtgaggcggcctaa

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