Bipolaris oryzae: COCMIDRAFT_89978
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Entry
COCMIDRAFT_89978 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14679
tRNA ligase [EC:
6.5.1.3
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bor03016
]
COCMIDRAFT_89978
Enzymes [BR:
bor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.3 RNA ligase (ATP)
COCMIDRAFT_89978
Transfer RNA biogenesis [BR:
bor03016
]
Eukaryotic type
tRNA spricing factors
Other tRNA splicing factors
COCMIDRAFT_89978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_lig_T4_1
tRNA_lig_CPD
tRNA_lig_kinase
AAA_18
DUF1087
Motif
Other DBs
NCBI-GeneID:
19127590
NCBI-ProteinID:
XP_007686032
JGI:
Cocmi1_89978
UniProt:
W6ZUL3
LinkDB
All DBs
Position
Unknown
AA seq
827 aa
AA seq
DB search
MAHRERAPYVPQDPKEVTDLVHALEAHKGKKGQGGFSVKKHTFPLPNGRTVDSWKMNDWD
YKKENLPTYARGLFTYKNLQGNYEIAVRGYDKFFNHGEIRKTEWKNVEKNTQGPYELSVK
ENGCIIFVAGLDDDTLLVCSKHSTGPREGCLSHAVAGEQWVERHVAKVGRTKAELARTLR
SMNATLVAELCDDEFEEHVLAYTPEQAGLYVHGINLNLPDFATYPGHLVDKFADEWGMKK
VTYVIENDIKKVKAFLDKVAETGNYEGRDTEGFVIRCQARETENAPYVDWFFKYKFEEPY
LMYRQWRECTRALIAGKVPRYKKHEAITKEYLDFARWKFTQNKTLAKAYNENHGIIKMRD
EFLASRGTTGAEIIRQELENGAVESKNATGNIVLVPVATIGCGKTTLALALVKLFGWGHF
QNDNVKAKKGRGQVFADTISSLLVTNPVVIADRNNHQKRERDQLINDISKNVPDARFVAL
HYVHDRHNYDRIREATRARVLDRGDNHQTIQAGSKGSSEIIEIMEGFMHRFQPVDPSESP
DELFDLVIDLDPTVDSRQNLESIIGRMFETYPALFADKQMPTDPDMDAAIHWALNDYTPD
FKMDLSRGNNDRKGIQNKQNNQKAQPVAKQKKAPRMEYFSVRLNTNRVNAVLDDLFKDKD
AMTARMYNQLKQSRRVQNEFHVTLIHRASAAENQEYWDKLVKHHENMQKTNMEGSWEPEL
GKCDVQLERLIWDDRIMCFVVRLNGSSTLQIESEAGTATEELVFTTANPIAHVTVGTAAP
SIKPMESNALLQRWVNGGSGGQTGIGELSVKGNVVLDGSVRGVLGRM
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccgcgagagagcgccctatgtgccgcaagacccaaaagaggtcaccgatttg
gtccacgctctcgaggcacataagggcaagaagggacagggtggtttctcagtaaaaaaa
cacacattcccacttcccaacggccgaaccgtggactcatggaagatgaacgattgggac
tacaaaaaagagaatctccccacatatgcgcgaggactctttacatacaaaaacttgcag
ggtaactacgagattgcagtcagggggtacgacaagttcttcaatcatggagagatccgg
aagacggaatggaaaaatgtggaaaaaaacacacagggtccgtacgagttgagtgtaaaa
gagaacgggtgtattatctttgtagctggcctagacgacgacacactactggtctgcagc
aaacactctacaggccctcgggaaggatgtctcagtcacgctgttgcgggcgagcagtgg
gttgagcgacatgttgccaaagtcggcaggaccaaggcggagctggcgcgtacccttcgg
tccatgaacgcgacattagtagcagaactatgcgatgacgaattcgaagagcatgtgctg
gcatatactcctgagcaggctggcctctacgtacacggcatcaatctgaacctgcctgac
tttgcgacatatcctggccatctggtcgacaaatttgccgacgagtggggtatgaagaag
gtcacatacgtgatcgagaacgatatcaagaaagtaaaggccttcttggataaggttgcg
gagacgggcaactacgagggtcgcgacacagagggtttcgtcatccgctgccaggcacgc
gagactgagaacgcaccatatgtggattggtttttcaagtacaagttcgaggagccatat
ctcatgtaccgtcagtggcgcgagtgcactagagctctcatcgccggcaaagtaccgcgt
tacaagaaacacgaggcaatcaccaaggagtaccttgactttgcgcgctggaaattcact
caaaacaagaccttggccaaggcttacaacgagaatcacggcatcatcaagatgcgtgac
gagttcttggcttcgcgtggaaccactggtgctgaaatcattcgacaagaactggaaaat
ggggcagtcgagagcaaaaatgcgactgggaatattgtgcttgttcctgttgcaactatt
gggtgcggaaaaacaactctggctcttgctctagtcaagttgtttggatggggtcacttc
cagaacgacaatgtcaaggccaaaaaaggtcgtggccaggtgttcgctgacacgatttct
tcgctgctagtcacaaacccagtcgtcattgccgatcgaaacaatcatcagaagcgcgag
cgagaccagctcatcaacgacatctctaagaacgtgccagatgcgcgcttcgtcgcattg
cattatgttcatgaccggcacaactacgaccgaatccgagaagcgacacgggcgcgtgtg
cttgaccgtggcgataatcatcagaccatccaggcaggctcaaagggatcaagtgagatt
atcgagatcatggaaggtttcatgcatcggttccagccagtcgatccttctgaaagcccg
gacgaactcttcgatttggtcattgacttagaccctactgtcgactcccgccagaatctt
gagtcaatcattggaagaatgtttgagacatatccagctctatttgccgataaacagatg
ccgactgatcccgatatggacgctgctatccactgggctctgaacgactacacgccggat
ttcaagatggacctatcgcgaggcaacaacgatagaaagggtatccagaacaaacaaaac
aaccaaaaagctcaaccagtagcaaaacaaaagaaggctccacgcatggagtacttctcc
gttcgtctcaacaccaaccgcgtcaacgcagtcctcgacgacctcttcaaggacaaggac
gccatgaccgcccgaatgtacaaccaactaaagcagagccgccgcgtccaaaacgaattc
catgtcactttgatccaccgggcctctgcagctgagaaccaagaatactgggacaagctc
gtcaagcaccacgaaaacatgcaaaaaacaaacatggagggctcgtgggaaccagagctc
ggcaagtgcgacgtacaactcgaacgcctcatctgggacgaccgcataatgtgcttcgtt
gtacgcttgaatggctctagcaccttgcagatcgagagtgaggctggtaccgcaaccgag
gaacttgttttcacaactgcaaatcccattgcccacgttactgtcggtaccgcggcgccg
agcatcaagcctatggagagcaacgcactgttgcagcgctgggtgaatgggggctcggga
ggtcagactggaattggggagttgagtgttaagggcaatgttgtgctcgacggaagtgtg
aggggtgtgcttggacgcatgtag
DBGET
integrated database retrieval system