Paraburkholderia phymatum: Bphy_1697
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Entry
Bphy_1697 CDS
T00704
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_1697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_1697
03016 Transfer RNA biogenesis [BR:
bph03016
]
Bphy_1697
Enzymes [BR:
bph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bphy_1697
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bphy_1697
Transfer RNA biogenesis [BR:
bph03016
]
Prokaryotic type
tRNA degradation factors
Bphy_1697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
RcsD_ABL
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
ACC70879
UniProt:
B2JKQ2
LinkDB
All DBs
Position
1:complement(1931729..1934182)
Genome browser
AA seq
817 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSETPLAANDIAEALSIKRQEREGFFKRLAAMERDGQIRLD
QRGHYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTGEMQKVMHNDRVLARIVGY
DRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVVPEEKRIGHDILITQNTKKAKVGQVV
VVELTDFPSRHSQPLGRVIEVLGDIDDPGMEIEIAVRKYGVPHEFSQAALDAAAKLPDEV
RPVDIKHRVDLRDVPLVTIDGEDARDFDDAVYCEPIKVGRGDGFRLIVAIADVSHYVLPD
GGLDVDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMVITARGEIKAYQ
FYPGVMHSAARLTYTEVAAVLTNTKGPEATRRAALLPQLQNLYGVYKSLFAARQKRGAID
FDTTETYIVCNAQGKIEQIVPRHRNDAHKLIEECMLAANVCAADFMKRNKHPGLYRVHAG
PTAERLENLRTFLRGMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQTMLLRSMQQAVY
SPENIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYEPKAPHGVELNTALSPR
ARALQAEDEKRGNRGRPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVSGVTSFGIFVQLDALFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKSQAHRATTADKASDLGGPRVRSIERAAQAEGGRRKK
APAQTAAVKEARAARKAAVSKKRAASKSSAKPARKKR
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtatccgattccaagccgcgaagaaatcctcggcgtgctgcgcacg
agtgaaacgccgcttgcagcgaacgacatcgccgaagcactgtcgatcaagcgccaggag
cgcgaagggtttttcaagcgcctcgccgcgatggagcgcgatggccagatcagactcgat
cagcgcgggcattaccaactgactcatccgtcgaacttcgtcgcgggccgcgtgcagggc
catcgcgacggctacggctttctgatccgcgacgacggccaggacgacctgttcctgccg
acgggcgaaatgcagaaggtcatgcacaacgaccgcgtgctcgcgcgcatcgtcggctat
gaccggcgcggccggcccgaaggccatatcgtcgaggtcaccgaccgcgctaacaagcgc
gtgatcgggcgtctgttgaatgagaacggcgcgctgatcgtcgtgcccgaagagaagcgc
atcggccacgacatcctgatcacgcagaacacgaagaaggcgaaggtggggcaggtggtc
gtcgtcgaactgacggactttccgagccgccattcgcagccgctcggacgcgtcatcgaa
gtactgggcgacatcgacgaccccggcatggagatcgaaatcgcggtgcgcaagtacggc
gtgccgcacgagttcagccaggccgcgctcgacgccgccgcgaagctgcccgacgaagtg
cggcccgtcgacatcaagcatcgcgtcgatctgcgcgacgtgccgctcgtcacgatcgac
ggcgaggacgcacgcgatttcgacgatgcggtgtactgcgagcccatcaaggtcgggcgt
ggcgacggcttccgcctgattgtcgcaatcgccgacgtgtcacattacgtgctgcccgac
ggcggcctggatgtcgacgcgatcgagcgcagcacgtcggtatacttcccgcgccgcgtg
attccgatgctgccggaaaagctgtcgaacggtctttgctcgctgaacccgcaagtggat
cgctgcgtgctggtctgcgacatggtcatcaccgcgcgcggtgagatcaaggcgtatcag
ttctatccgggcgtgatgcactcggccgcgcgtctcacgtacacggaagtcgcggccgtg
ctgaccaacacgaaggggccggaagcgacgcgccgcgcggcgttgctgccgcaactgcaa
aatctgtacggcgtctataagtcgttgtttgccgcccgtcagaagcgtggcgcgatcgac
ttcgatacgacggagacgtacatcgtctgcaacgcgcagggcaagatcgagcagatcgtg
ccgcgtcaccgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgacttcatgaagcgcaacaagcatccgggtctgtaccgcgtgcacgccgga
ccgacggccgagcgcctcgagaatctgcgcacgttcctgcgtggaatgggcctcacgctt
ggcggcggcgacacgccgcatgccagcgattacgccgcgctgatggcgcacatccgcgac
cgtcccgacgcgcagatgctccagacgatgttgctgcgctcgatgcagcaggccgtctac
agtccggagaacattggtcacttcggtctcgcgtatgaggcgtacgcgcacttcacgagc
ccgatccgccgctatcccgacctgctcacgcaccgcgcgatctacgcgattttgcaaggc
cgcaagtacgagccgaaggcgccgcatggcgtcgagctgaacacggcgctgtcgccgcgc
gcgcgcgcgctgcaggcggaagacgagaagcggggcaaccgcggccgtccaaacacggcc
atctgggaagaactcggcttgcactgctcggcgaacgagcgccgtgcggatgaggcatcg
cgcgacgtcgaagcctggctcaagtgctacttcatgcgcgacaagctcggtgaagagtac
ggcggcatggtgagcggcgtgacgtcgttcggcatcttcgtgcagctcgacgcgcttttt
atcgaagggctcgtgcacgtgacggaactcggctccgactacttccagtacgacgagatc
aagaacgaactgcgcggcgagcgcacgggcatccgttaccggttgtcggaccgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgacttccgcctggtgcgcgac
acgcccgtgaagtcgcaggcgcatcgggcgaccactgcggacaaagcgagcgatctcggc
ggcccgcgtgtgcgttcgatcgagcgtgccgcgcaggccgaaggcggccgtcgcaagaaa
gcgcctgcacagaccgcggccgtgaaggaagcgcgcgcggcgcgcaaggcggcggtgtcg
aagaagcgcgcggcgtcgaaatcgtcggcaaagccggcgcgcaagaagcgttga
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