Paraburkholderia phymatum: Bphy_2079
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Entry
Bphy_2079 CDS
T00704
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03030
DNA replication
bph03430
Mismatch repair
bph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bphy_2079
03430 Mismatch repair
Bphy_2079
03440 Homologous recombination
Bphy_2079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bph03032
]
Bphy_2079
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_2079
Enzymes [BR:
bph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bphy_2079
DNA replication proteins [BR:
bph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Bphy_2079
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Bphy_2079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ACC71257
UniProt:
B2JE49
LinkDB
All DBs
Position
1:complement(2329883..2333446)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVRNKTGYLNLCELLSKAWLTNQYRGRAEVE
TAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGFYIELQRGGQA
GAEAYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILANPRRQKRFTT
DQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEKRLEQLFPEQAERDAQREGYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIAD
AMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPA
AFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
RETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAK
HREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAEADGKRSRTIRYGLG
AIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALIRAGAFDSLHENRAQ
LIASVSLAMEAADQASANAMQAGLFDIGDAPSQGHELVDEPAWPDKRRLQEEKTALGFYL
SGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQC
EVTVFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRFAQAVKV
QMNGNANAHTLRSVLEAYRAKPEDAEVAAPAPRSGARGGFGGNGESGGRAQRPSAPIPNG
LAVQIVYRSDNAEGEVRLGDAWRVKPTDELLAALRREFSGSAIEIVY
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgatt
gccgatggcattgtgcgcatcgacgacgtcgtcgatgccgctgccaaagacggtcagggc
gcgctcgcgctcaccgatctcggtaacgcattcggtctcgtccgtttttacaaggaagcc
cgtggcaaaggggtcaaacccattgccggctgcgatgtctggatcacgaatccggatgac
cgcgacaagccttcgcggcttctgttgctggtcaggaacaagaccggctatctgaatctt
tgcgaactgctgtcgaaggcgtggcttaccaaccagtatcgcgggcgcgcggaagtggaa
acggcgtggctcgaaagcggcctcgccgaaggactgctggcgctgtcgggcgcgcagcac
ggcgacgtgggcctcgcgctcgcggcgggcaaccaggaagccgcgcagcgcaatgcgcag
cgctgggcgcagatcttcccgaacggtttttacattgaattgcagcgcggcggacaagcc
ggtgcggaagcgtatgtgcagcaggccgtcgcgctggcggcgtcgctgaagctgcccgtc
gtcgcgacgcacccgctgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgc
gtgtgtatttccgagggcgatattctcgcgaatccgcgccgtcagaagcgctttacgacg
gaccagtatttccgcacgcaggacgagatgatcgcgctgtacgcggacatcccgtccgcg
atcgcgaacaccgtcgaaatcgcgaaacgctgcaatctcacgctcgaactcggcaagccg
aagctgccgttgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctg
tcgaaggaagggcttgagaagcgcctggaacaactgtttcctgaacaggccgagcgcgat
gcgcaacgcgaaggctattacgcgcggctcgacttcgaatgcggcacgatcatcaagatg
ggctttcccggctacttcctgatcgtggcggacttcatcaactgggccaagaacaacggc
gtccccgtcgggccaggccgcggctcgggcgcgggttcgctggtcgcgtacgcgctcggc
attaccgacctcgatccgctgcgctataacctgctgttcgagcgttttttgaatccggag
cgcgtgtcgatgcccgacttcgacatcgacttctgtcagcacggccgcgaccgcgtgatc
cagtacgtgaaggagaagtacggcgcggacgccgtctcgcagatcgcgacgttcggcacc
atggcagcgaaagccgcggtgcgcgacatcggccgcgtgctcgatctcggctatatgttc
acggacggcgtcgccaagctgattccgttcaagccgggcaagcacgtcacgatcgcggac
gcgatgaaggaagagccgcttctgaaggagcgcttcgacaatgaagacgaagtgcaccag
ctgctcgaactcgcgcagcgcgtggaaggcctcacgcgtaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctgacggacttctgcccgctctatacgcagggcgac
gaaagcggcgtggtgagccagtacgacaaggacgacgtggaagccgtcggcctcgtgaag
ttcgactttctgggtctgaccacgctgaccattctcgactgggccgagcgctatatccgc
cgtctcgatccatcgaaggaaaactggtcgctcgcacaggtgccgctcgacgacccggcg
gcgttctcgatcctcaagaaagcgaatacggttgccgtgttccagctggaaagccgcggc
atgcagggcatgctgaaggacgcgcaacccgaccgcttcgaggacatcatcgcgctcgtg
gccttgtaccggcccggcccaatggatctgatcccgagcttctgcgcgcgtaagcacggc
cgcgagacagtcgaatatccggatccgcgtgtcgaacctgtcctgaaagagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctg
gggggcgccgacctgctgcgtcgtgcgatgggtaagaaaaagccggaggaaatggcgaag
catcgcgagatcttcgccgagggtgccgccaggaacggcttgacgcgcgagaaggccgac
gaaaccttcgacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggct
gcttacgcgctgctcgcgtatcacaccgcgtggctcaaggcgcatcatcccgccgaattc
atggcggccaacatgtcgctcgcgatggacgacacggacaaggtgaagatcctgttcgaa
gactgcctcgcgaacaagatggccgtgctgccgcccgacatcaatctgtccgcctaccgg
ttcgagccggtagcggaagcggacggcaagcgttcgcgcacgatccgctacggccttggc
gcaatcaagggtagcggccagaacgcgatcgaagaaattctgcgcgcgcgcgaagaaggc
ccgttcgtcgatatcttcgacttctgcaaccggatcgatcggcgcgtcgtcaatcgccgc
acgatcgaagcgctgatccgtgccggcgcattcgactccctgcacgagaaccgcgcgcag
ctgatcgcatccgtgtcgcttgcgatggaagccgccgaccaggcgagcgccaacgcgatg
caggcgggtctgttcgacattggcgatgcgccttcgcagggccacgaactcgttgacgaa
cccgcgtggccggacaagcgtcgtctgcaggaagagaagacggcgctcggcttctatctg
tcggggcatctgttcgacgcgtacaaggacgaagtgcgacgcttcgtgcgccagaagatc
ggcgagctcaaggaagggcgcgacaagctggtggcgggcgtgatcgtgtcgctgcgcacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgc
gaagtgacggtattcaatgagcaattcgaggcgcacaagcagctgttcaaggaagacgaa
ttgctcgtcgtgcaggggcaggcgcgcaacgatgcgttcacgggcggcatccgctttacc
gtcgacacgccgatggacctcggccgcgctcgcacgcggttcgcgcaagcggtgaaggtg
cagatgaacggcaacgcgaatgcacacacattgcgctcggtgctcgaggcctatcgcgcg
aagccggaagacgctgaagtcgctgcgccggctccccgcagcggtgcccgcggcggtttc
ggcggcaatggagaatcaggcgggcgtgcacaacggccgtcggcgccgatcccgaacggg
cttgccgtgcagatcgtctaccgcagcgacaacgcggagggcgaagtgaggcttggcgac
gcatggcgcgtgaagccgacggacgaactgctcgccgcattgcgccgcgagttttcgggc
agcgcgatcgaaatcgtgtattga
DBGET
integrated database retrieval system
