Candidatus Blochmannia pennsylvanicus: BPEN_524
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Entry
BPEN_524 CDS
T00272
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpn
Candidatus Blochmannia pennsylvanicus
Pathway
bpn03030
DNA replication
bpn03410
Base excision repair
bpn03420
Nucleotide excision repair
bpn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPEN_524 (ligA)
03410 Base excision repair
BPEN_524 (ligA)
03420 Nucleotide excision repair
BPEN_524 (ligA)
03430 Mismatch repair
BPEN_524 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpn03032
]
BPEN_524 (ligA)
03400 DNA repair and recombination proteins [BR:
bpn03400
]
BPEN_524 (ligA)
Enzymes [BR:
bpn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BPEN_524 (ligA)
DNA replication proteins [BR:
bpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BPEN_524 (ligA)
DNA repair and recombination proteins [BR:
bpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BPEN_524 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BPEN_524 (ligA)
MMR (mismatch excision repair)
DNA ligase
BPEN_524 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BPEN_524 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AAZ41134
UniProt:
Q492G5
LinkDB
All DBs
Position
complement(625784..627571)
Genome browser
AA seq
595 aa
AA seq
DB search
MKFVKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAESSPTQ
RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIKIKLHANHVMSYCCELKIDGVA
VSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGEVF
ISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGEKE
LPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVNSC
AYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVTIR
KVNMHNINEVKRLGLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKTIELPRFCPVCGSR
IKTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMGNKIIDQLVNQGLIFTSSDV
FRLNKNKLLCLEGFGLENIERLLRSIEDSKKITLARFIYALGIYGVGETVASNLAIVYKT
IENLAAADLQSLSNLKYVGPIIANNIYHFFRNPDNLKNVQDLIDPAIGIQLYVIT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaacaaaaaatacaaaaattaagaaaaaaattacgtcattgggaatat
ttatactatacaaaaaatgaatctgcagtatccgatgaaaagtatgatgcgatgttagaa
aaattaaatcagttggaacaaatttatccacatttgattgcagaaagttctcctactcaa
cgtataggaggtgtgtctcaatataatttcaaaaaaatacatcataaggtgccaatgcta
tctttaaatagtatcgttgcatcgtttcaattattatcatttgataaaagaataaaaatt
aaactacatgctaatcatgttatgtcatattgttgtgaattaaaaatagatggggtggca
gtgagtttattgtataaagaagggaaattaatttatgcggcaactcgaggtgatggtaaa
atcggagaggatgttactgaaaatataagcactattcgcgcagtacctatgtgtttaaaa
atagattctaataaatatggtaaattaccatatttattagaaattagaggagaagtattt
atatctaaattatgttttttagaattgaacaaaataacgatacaacaaggcaacaaacct
ttttctaatgcgcgaaatgctgcttctggttccttgcgtcagttagatcctagtgttaca
gccacacgcccattaagtttttattgttatggcattagtaattattgcggagaaaaggaa
ttaccagatagtcattgggaacgattacaattatgcgaaaattggggtttaccgattaat
aattatatccgcttaattagtggagttaataaagtattagaatattattcttatataaag
acaatacgatctaatttggaatttaacattgatggaatagttattaaggtaaatagttgc
gcatatcagagtaaattaggttgtggatctagagcacctcattgggctcttgcctataaa
tttccttcggaagtaagttctgctaaagtagataacgtaattttccaagttgggcgaaca
ggtattataactccaatagcttatttagagcctattgtaatttctgatgttacaattaga
aaagtaaacatgcataacatcaatgaagttaaaagacttggattaatgattggcgataca
gttcgtatacaaagatctggcgatgtgattcctaaaattgtagaagtaattttatcagaa
cgtaccgatcatgtaaaaactatagaattaccccgattttgtccggtatgcgggtctcgt
attaaaacatggcgtaatcaatcaatattacgctgtacggccggattatcgtgccttgct
caacgaaaggcaacgcttgagcattttgtttctaaaaaagcaatgaacatttatggaatg
ggaaataaaattattgatcaattagttaatcaaggtttaatatttacttcatctgatgtt
tttcgtttaaacaaaaataagttactttgtttagagggctttggtttagaaaatattgaa
cgtttattaaggtctatcgaggattctaaaaaaattactttggctcgttttatatatgcg
ctaggtatttatggtgtaggtgaaacagtagctagtaatttagctattgtatataaaact
atagaaaatttggccgctgctgatttgcaatcattatcaaatttgaaatatgtagggcca
attatagctaataatatatatcattttttcagaaatccagacaatttaaaaaatgttcaa
gatttaattgatccggctattggtattcagttatatgttattacatga
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