Blautia producta: PMF13cell1_01223
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Entry
PMF13cell1_01223 CDS
T05894
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpro
Blautia producta
Pathway
bpro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMF13cell1_01223 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpro03400
]
PMF13cell1_01223 (mfd)
Enzymes [BR:
bpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMF13cell1_01223 (mfd)
DNA repair and recombination proteins [BR:
bpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMF13cell1_01223 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
MFD_D3
RecG_dom3_C
AAA_22
DUF3136
Motif
Other DBs
NCBI-ProteinID:
QBE95699
UniProt:
A0A4P6LUF5
LinkDB
All DBs
Position
complement(1304021..1307590)
Genome browser
AA seq
1189 aa
AA seq
DB search
MQAVIQPLLNLNEYQEIRSRLPENRGVLQLSGCIESQKAHVMYGLFEGMRQDEKQKNANC
LIIAENDLKAKELYEDYRFYDRDVLFYPAKDLIFFQADIHGNLLTKQRMQVIAALLQKKG
VTVITSMGGCMDYLLPLSVIEQHVLHFKNDSVLDLGKLKKDLVNMGFEYSAQVEAPGQFA
IRGGIVDLFLLTEENPIRIELWGDEIDSIRSFETGSQRSIENLEEITIYPAAEMVLTQEV
LEKGLKAIEKEKNTTVKKLREAFLTEEAARLKNAVDEAVNAMKEFEDFAAAEHFIRYFYK
DPVTFLDYFDPADTLIFLDETNRLLEKGEAVESEFRESMKNRLEKGYLLAGQTDLLCGYK
KVVYRLNRKNCVSLCTMEQQKADWEMNGQYRTVTKSVNSYNNSFELLVKDLRYWKKNGYQ
VLLLSGSRTRAQRLAQDLQEEGLSSFYTEDLNRTIAPGEIMTSYGHAKRGFEYPLIKFVL
ITETDIFGQEKKKRRKKTEYSGKKIQSFSELNVGDYVVHENHGLGIYRGIEKVTVDKIVK
DYIKIEYSGKSNLYILATQLDMLQKYAGADAKAPKLNKLGGQEWKKTKTRVRGAVKNIAK
DLVALYAVRQSQNGYQYGPDTVWQKEFEEMFPFEETEDQLNAIEAAKHDMESRKIMDRLV
CGDVGYGKTEIAIRAAFKAVQESKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRF
KTPTEQKKTISDLQKGLVDIVIGTHRLLSKDVKYKDLGLLIVDEEQRFGVTHKEKIKSLK
ENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRTPIQTYVMEYNEEMVREAVSREI
ARGGQVYYVYNRVNDIDEITNRVAKLIPEANVAFAHGQMHEHQLEKIMYGFINGEIDVLV
STTIIETGLDISNANTMIIHDADQMGLSQLYQLRGRVGRSNRTAYAFLMYKRNKMLKEVA
EKRLHAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNEAVKEA
KGIKQQEEFETTIDLDMDAFIPPRYIPNEYQKLDIYKRIAGIENQEEYEDMLEELMDRFG
EPPKSVQNLLAIANLKALAHKVYVREIKQNGTEVKISMFERAKLDASGFPAVLEKYKNNM
TMRMEGQPYFLVSLKGRRPKEILDAMDIVSGILHEFEGILQEKEENLLP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcagtcatacagccacttttaaatttaaatgaatatcaggagatcaggagccgt
cttcctgagaacagaggcgttctgcagctgtccggctgcattgaatcccagaaagcccat
gtaatgtacggactgtttgaagggatgaggcaggatgaaaagcaaaagaacgccaactgt
ctgatcattgcggagaacgacctgaaagcaaaagaactttatgaggactaccgtttttat
gacagggatgtgcttttttatccggcaaaggaccttattttcttccaggcggatattcac
ggcaatcttctgacaaagcagaggatgcaggtgatcgcagcccttctgcagaaaaaaggc
gtgactgtcatcaccagcatgggcggctgtatggactatctgcttccgctttcagtcatt
gaacagcatgtgctgcatttcaaaaacgacagtgtgctggatctgggaaaactgaaaaaa
gatttggtcaacatgggatttgagtatagtgcacaggtggaggcaccggggcagtttgcc
atccggggcggcattgtggacctttttcttctcacagaggagaatcccatccgtatagag
ctttggggagatgagatcgactcgatccgaagctttgagacagggagccagcgctccatt
gagaacctggaggagataaccatctatcccgcggcggaaatggtgctgacccaggaggtg
ctggagaaaggcttaaaagccatagagaaggaaaaaaacaccactgtgaaaaagctgcgg
gaggcatttctcacagaggaggcagccagactgaaaaacgcggtggatgaagctgtcaat
gccatgaaggagtttgaagactttgcggcggcggagcactttatacggtatttttacaaa
gatccggtgacttttctggactattttgacccggcagacacccttatatttctggatgag
acaaaccgtcttctggaaaaaggggaagcagtggagagtgaattccgggaaagcatgaaa
aaccgcctggaaaagggatatctactggcaggtcagacagacctgctgtgcggatacaaa
aaggtggtttaccgcctcaaccggaaaaactgcgtatctctctgtactatggaacaacag
aaggcagactgggaaatgaacggtcagtaccgcacagtgacaaagtctgtgaattcctac
aacaacagctttgagctgctggtgaaagacctgcgctattggaagaaaaacggataccag
gtacttcttctttccggttccaggacaagagcgcagagacttgcccaggaccttcaggag
gagggactcagcagcttttatacggaggacctgaacagaaccatagcgcctggcgagatc
atgacctcctacggccacgcaaagcggggatttgaatatcccctgatcaagtttgtcctg
atcaccgagactgacattttcggccaggagaagaaaaagcgcagaaagaagacagagtac
agcggaaagaagatccagagcttttccgagctgaatgtaggcgactatgtagtccatgaa
aatcatggccttggtatttacaggggcatagagaaggtcactgtggacaaaatcgtcaag
gattatatcaagattgaatattccggcaagagcaacctctatatcctggcaacccagctt
gacatgctgcagaaatacgcaggcgcggatgcgaaagcgccaaagctcaacaaactgggc
ggtcaggagtggaagaagacaaagacaagggtaagaggtgcagtaaagaatatcgccaag
gatctggtggcactttacgcggtcaggcagtctcagaatggttatcagtatgggcctgac
actgtctggcagaaggagtttgaggaaatgtttccttttgaggagacagaggatcagtta
aacgccatcgaagctgcaaaacatgatatggagagccggaagatcatggaccgtctggtc
tgcggggatgtgggctacggcaagacagagattgccatccgcgcagccttcaaagccgta
caggaaagtaaacaggtggtatatcttgtacctaccacgattctggcgcagcagcactac
aatacttttgtacagaggatgaaggattttcctgtccgtgtggatctgctctgccgtttt
aagacaccgacggaacagaagaaaaccatatcagatttgcagaaggggctggtggatatt
gtcatcggcacccaccgtctcctctcaaaggatgtaaaatacaaggatcttggactcctc
atagtggatgaggagcagcgcttcggtgtgacacataaggagaagatcaagagcctgaag
gagaatgtggatgtgctcaccctgacagccactcccattccaagaactcttcacatgagt
cttatagggatccgtgacatgagcgttttggaagaggctcccatggacagaacccctatt
cagacctatgtcatggaatataatgaggagatggtacgtgaggcggttagccgggaaatt
gccagaggcggtcaggtctattacgtctataaccgggtcaacgatatagatgagatcacc
aaccgcgtggcaaagctgataccggaggcaaacgtggcatttgcccacggccagatgcat
gaacatcagcttgaaaagatcatgtacggcttcatcaacggtgagatcgacgtgctggtc
tccactaccatcattgagacaggactggatatttccaatgccaacaccatgatcatccat
gatgcggaccagatgggactgtctcagctctatcagctcagagggcgtgtaggccgctcc
aacaggactgcctatgcattccttatgtacaagagaaacaaaatgctaaaggaagtggca
gagaaacgcctccatgccatccgtgagttcacggatctgggcagcggcttcaagatagcc
atgcgtgacctggagatccgcggcgccggaaatcttctgggagcggagcagcacggccac
atggaagctgtgggatatgacctctactgtaaaatgctcaacgaggcggtgaaagaggca
aagggaatcaaacagcaggaggagttcgagacaaccatcgatctggatatggatgccttc
attccgccccgctacattcccaacgaataccagaaattggacatttacaaacgcattgcc
ggtatagagaaccaggaagaatacgaggatatgctggaagaacttatggaccggttcggg
gaacccccgaaatccgttcagaatctgcttgccatcgccaacctaaaggctcttgcccac
aaagtctatgtgcgtgagatcaagcagaacggtacagaagtgaagatatccatgtttgag
cgggcaaaactggacgcgtcaggttttcctgctgttctggaaaaatataaaaacaacatg
accatgcgcatggagggacagccttattttctggtttccctgaaaggccgcagaccaaaa
gaaatcctggacgctatggatatcgtgtccggtattcttcatgaatttgaggggatttta
caggaaaaagaggaaaatctcttgccctga
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