KEGG   Bordetella petrii: Bpet3441Help
Entry
Bpet3441          CDS       T00637                                 

Definition
(GenBank) unnamed protein product
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpt  Bordetella petrii
Pathway
bpt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Bpet3441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpt03400]
    Bpet3441
Enzymes [BR:bpt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bpet3441
DNA repair and recombination proteins [BR:bpt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Bpet3441
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CAP43784
UniProt: A9HXI5
LinkDB All DBs
Position
complement(3631855..3634323)
Genome map
AA seq 822 aa AA seqDB search
MADSLKRYREKRDFKQTPEPADGGQANEGARAFVVQKHWASRLHYDFRLELDGAMKSWAV
PKGPSFDPSVKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGVWVPVGNPRQGYR
DGHLKFDLHGAKLRGRWALIRMKGRETEKQPPWLLIKDRDGEARSEREFSVVDEMPDSVV
PLRKRRAQTASARNNAKKKTADNARDGIPGKPADLPEEFKPQLATLVDGPPRGGDWLYEV
KYDGYRILARLEDGKARLYTRNGHDWTARLPHLARAIGQLDVPSAWIDGEIVVLADNGAP
SFQALQNAFDRKRPAAIVYYVFDMPYVAGRDVRAEPLHARRAWLRQLVAANAAALQDTVR
FSETLDATPSQLVASACKMGLEGIIGKRRDASYVSRRSDSWIKLKCAQRQEFVIVGYTSP
QGARQGFGALLLAVHDKDGQLRYAGKVGTGFDTQGLESLARQLQALAVADSPLAAAAKAP
RGAHWVKPQLIAEVSFAEWTASGHVRQASFRGLRSDKPPQAIERETPVPARASRLTHPER
VIDSSTGLTKLDLARYYGLVAPLLLEHLRGRPVSFLRAPAGIGGELFFQKHPDTASLPGV
RSLPPSLDPGHAPLVEVATLEGIMSATQMNVVEFHTWNAVKTAIGKPDRMLFDLDPGEGV
KWAAVRQAAELVHVLLRELGLQAWLKTSGGKGLHVVVPLRRQYDWDAVKGFSQAVVQHLA
KTVPQLFVAKSGPRNRVGKVFADYLRNGFGATTVAAWSARARPGMGISVPLGWDELASLE
RSDQWTVANIHTRLDVGNAPWDDYAPQALGAAMKALGYRPGR
NT seq 2469 nt NT seq  +upstreamnt  +downstreamnt
atggcagactccctgaagcgttaccgcgagaagcgcgatttcaagcagacgcccgaaccg
gccgatggcggccaggccaatgagggggcgcgcgcgtttgtcgtgcagaagcactgggcc
agccgcttgcactacgacttccggctggaactcgatggcgcgatgaaaagctgggcggtg
cccaagggccccagtttcgatccatcggtcaagcgcatggccgtccaggtagaagaccac
cccattgcctacaaccagttcgagggggaaatccccaagggccagtatggcgcgggcaag
gtcatcatatgggacgagggcgtgtgggtgccggtaggcaacccccgccagggttaccgc
gacgggcacctgaagttcgacctgcacggcgccaagttgcgcgggcgctgggccctgata
cgcatgaagggccgcgaaaccgagaaacagcccccctggctgttgatcaaggaccgcgat
ggcgaggcgcgcagcgaacgcgagttctcggtggtggacgaaatgcccgacagcgtcgtg
cctttgcgcaagcgccgggcacagacagcgtcggcccgcaacaacgcgaagaaaaaaacg
gccgacaacgcgagggacggcatacccggcaagcccgccgacctgcccgaggaattcaag
ccgcagctcgccaccctggtcgacggtccgccgcgcggcggcgactggctgtacgaggtc
aagtacgacggctatcgcatcctggcccgcctggaagatggcaaggcgcggttgtatacg
cgcaatggccacgactggaccgcgcgcctgccgcacctggcccgggccattggccagctg
gatgtgccgtcggcctggatcgatggcgagatcgtggtactggccgacaacggcgcgccc
agcttccaggctctgcagaatgccttcgaccgcaagcggcccgccgccattgtgtactac
gtgttcgacatgccgtacgtggcggggcgcgacgtgcgggccgagccgctgcacgcccgg
cgcgcctggctgcgccagctggtggccgccaacgccgccgccctgcaggatacggtgcgc
ttcagcgagaccctggatgccaccccctcgcaactggtggcgtcggcctgcaagatgggt
ctggagggaatcatcggcaagcgccgggacgcctcgtatgtatcgcggcgcagcgatagc
tggatcaagctcaagtgcgcccagcgccaggaattcgtaatcgtggggtatacctcgccg
cagggcgcgcgccagggattcggcgcgttgctgctggccgtgcacgacaaggacggccag
ttgcgctacgcgggcaaggtcggcaccgggttcgacacgcaggggctggaatcgctggcg
cggcagttgcaggcgctggcagtggccgacagcccgctggcggcggccgccaaggcgccg
cgcggcgcgcattgggtcaagccgcaactgatcgccgaagtttcgttcgccgaatggacg
gcgtcgggccatgtacggcaggcgtcgtttcgcgggttgcgcagcgacaagccgccgcag
gcgatcgagcgcgaaaccccggtgccggcgcgcgcctcgcggctgacgcatcccgagcgc
gtcatcgattcgagcaccggccttaccaagctcgacctggcgcgctactacggcctggtg
gcgcccttgctgctggagcacctgcgcgggcggccggtgtctttcctgcgggcgccggcc
ggcatcgggggtgaattgttcttccagaagcaccctgacaccgcttcgctgccgggcgtg
cggtcattgccgcccagcctggatccgggccatgccccattggtggaggtggccaccctg
gaaggcatcatgtcggccacgcagatgaacgtggtggagttccacacctggaatgccgtc
aagaccgcgatcggcaagcccgaccgcatgctgttcgacctggacccgggcgaaggagtg
aagtgggcggccgtgcggcaggcggctgagctggtgcatgtgctgctgcgcgagctggga
ctgcaagcgtggctgaagaccagcggcggcaagggcctgcacgtggtggtgccgctgcgt
aggcagtacgactgggacgcggtgaaaggtttctcgcaggccgtcgtgcagcacctggcc
aaaaccgtgccgcaactgttcgtggccaaaagcgggccgcgcaaccgggtcggcaaggtt
ttcgccgactacctgcgcaacggcttcggcgccaccaccgtggcggcctggtcggcgcgc
gcccggccaggcatgggcatctcggtgccgctgggctgggacgagctggccagcctcgaa
cgcagcgatcaatggacggtcgccaacatccacacgcggctggacgtgggcaacgcgccc
tgggacgactacgcgccccaggcgctgggcgcggcgatgaaggcgctgggttaccggccc
ggccggtga

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