Bacillus pumilus MTCC B6033: BW16_16860
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Entry
BW16_16860 CDS
T03175
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bpum
Bacillus pumilus MTCC B6033
Pathway
bpum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW16_16860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpum03400
]
BW16_16860
DNA repair and recombination proteins [BR:
bpum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW16_16860
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BW16_16860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
DUF87
AAA_22
AAA_30
AAA
AAA_7
TrwB_AAD_bind
AAA_16
AAA_19
AAA_25
HEM4
AAA_5
UB2H
UvrD-helicase
AAA_6
EMC3_TMCO1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHL72968
LinkDB
All DBs
Position
complement(3170758..3172743)
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AA seq
661 aa
AA seq
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MSDRFELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPT
LVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID
KLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQ
YSRNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTREEKMEKAIINIEKELEEQLEKLRENGKLLEAQRLEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQIRAMYNGDQARKQV
LVDHGFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPEVVEQIIRPTGLLDP
IIEVRPIEGQIDDLIGEIHARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNAEGRVIMYADNMTKSMDIAIQETKRRREQQEAYNEKFGITPQTIHKKIRDVIKATK
VHEDSEEYETKAAPKLSKMSKKEREKVIENIEMEMKDAAKALDFEKAAELRDLLLELKAE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccgctttgaattagtttctaactatcagccccaaggggatcagccaaaagcc
attgaaaagcttgtggagggcatccatcaggggaaacagcatcaaacgctgttaggtgct
acaggtacgggaaagacctttactgtatccaacctgatcaaagaagtgaacaaaccaaca
cttgtcattgcgcataacaagacacttgccggacaattatacagcgagtttaaggaattc
tttccgaataatgctgttgaatattttgtgagttattatgattattaccagcccgaggcg
tatgtgcctcaaactgatacatttattgaaaaggatgccagtattaatgatgagatcgat
aagctaagacactccgccacatcctcattatttgagcggagagatgtcatcatcattgcc
agtgtgtcctgtatttatggcttaggttctcctgaagaatacagagagcttgtgctgtct
ttacgaactgaaatggaaattgaacgcaatcagctgctgcgtaagcttgtggatattcag
tattctcgtaatgatatagattttcagcgcggaaccttcagagttcgaggagatgtcgtt
gaaatttttcctgcttcacgagatgagcattgtatcagagtggagtttttcggtgatgaa
attgaacgtattcgtgaagtagatgctctcactggagaaattctcggtgatcgtgaccac
gttgctattttcccagcatctcacttcgtcacaagagaagaaaagatggaaaaagcgatt
attaatattgaaaaagagcttgaggaacagttggaaaagcttcgtgaaaacggaaaactg
cttgaagcacagcgtcttgagcagcggacaaggtatgaccttgagatgatgagagagatg
ggcttttgttcagggattgagaactactcaagacatctcaccttacgtccgcccggttca
acaccttacacattgcttgattattttccggatgattttatgattgttgtcgatgagtca
cacgtgaccatcccgcaaattcgcgccatgtacaatggggaccaggcaagaaaacaagtg
cttgttgaccacggattccgtctgccgtcagcacttgataatagaccactcacatttgat
gagtttgagaagcacattaaccatattgtgcatgtatccgcaacacctggcccatatgag
cttgagaaaacgccagaggtcgtggaacaaattattcgaccaaccggtttgcttgatcca
atcattgaagtccgtccgattgaaggacaaatcgatgacttaattggggaaattcatgca
agggttgagaaaaatgagcgtgtacttgtgacgactttaacgaagaaaatgtctgaggat
ctgacagattatctgaaagaaatcggaatcaaggtcaattatctgcactcagaaattaag
acactagagcggattgagattatccgtgatttacgtctcggaaaatatgatgtgcttgtt
gggatcaaccttcttcgagaaggtttggatattccagaggtgtcgctcgtggcgatttta
gatgcggataaagaaggctttttacgttcagaaagatccctcatccagacgattggccgt
gctgcaagaaatgcagaaggccgggttattatgtatgcagacaatatgacgaaatcaatg
gacattgccatacaagaaacaaagcggagacgtgagcagcaagaagcgtataatgagaaa
tttggtatcactccgcaaacgatccataagaagattcgagatgtgatcaaggcaacaaaa
gtacatgaggattcagaagaatacgaaacaaaagcagcaccaaagttgtcaaaaatgagc
aaaaaagaacgagaaaaagtgatcgaaaacatcgagatggaaatgaaagatgcagcaaaa
gcgcttgattttgaaaaagcagcagaattaagagatctattgctagagctaaaagcggaa
ggatga
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