KEGG   Paraburkholderia phytofirmans PsJN: Bphyt_1438
Entry
Bphyt_1438        CDS       T00765                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
bpy  Paraburkholderia phytofirmans PsJN
Pathway
bpy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Bphyt_1438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpy03400]
    Bphyt_1438
DNA repair and recombination proteins [BR:bpy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Bphyt_1438
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Bphyt_1438
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_29 SMC_N AAA_21 AAA_16 nSTAND1 AAA_22 AAA_33 RsgA_GTPase AAA_18 AAA_23 NACHT Viral_helicase1 AAA_25 UvrA_DNA-bind nSTAND3 ATPase DnaJ_CXXCXGXG DUF4350 SbcC_Walker_B RNA12 DUF87 Anti-TRAP
Other DBs
NCBI-ProteinID: ACD15853
UniProt: B2T2P2
LinkDB
Position
1:1608635..1614586
AA seq 1983 aa
MAHSFRRSEKLASNGKNGKNGSSSINGTIKIRGARQHNLKNVDLDVRTGEMTVVTGPSGS
GKSSLVFDTLYAEGQRRYVETFSAYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSR
STVGTMTELNDHLKLLYARAAELFDRKTAHQVRHDTPETIYAELLERTAQNEPRLVVTFP
VELPESASEQEVEQWLSASGYTRVQAQREVDSPTGKRKLLDVVADRFRLRSVDKQRVVEA
IEASLKRGGGRVNIYVLPASPEGPESQEAEPQIWRFSTGLHSPESDLRYADPQPALFSFN
SAYGACEVCRGFGRVIGVDLGLVIPDARKTLRDGAIKPMQTPAWKECQDDLMRYAAKADI
RRGTPWGELTDAERDWVINGSPDWNGKWQSHWYGVKRFFEYLESKAYKMHIRVLLSKYRS
YTPCETCGGARLKTESLLWRLGSKANADDVLPAAKRFLPRGVDWTRGQLEALPGLTVHDL
MLMPIERIRHFFDEISLPSALLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGG
EVQRINLTTALGTSLTKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSV
MLAADRLIDMGPGPGERGGSIIYDGAPEAIRSSGTLTGEYLGGRRHVADAAHWSQRPVDA
TTPRIVLEGATEHNLLDVTVEIPLERLVCVTGVSGSGKSTLLQDVLYPAMARHFGLATES
PGAFRSLSGADQVTDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPLAQQRGYGPG
MFSFNSGEGRCPTCGGSGFEHIEMQFLSDVYLRCPDCDGRRYRAELLEVKIERGEPARAL
SIADVLELTVSEATTYFAKDAEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGF
LAESAQARTARSAKQAVAKRLFMFDEPTTGLHFDDIAKLMQAFGKLLASGHSLIVIEHNL
DVIRAADWLIDLGPEGGDGGGRVLCAGTPEDVKTCSESHTGEALLQYDRAMGAAAEPASQ
GIPLQKALSAARARRAIEGEDVVRIVNAREHNLKSLDVDIPHGKFNVITGVSGSGKSTLA
FDILFHEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATT
SEVWHFLRLLYVKLGLQHCIHDGTPVTSQSVESIAAQLLRDHKGQHVGFLAPLVVNRKGV
YTDLAKWAKARGNTHLRVDGEFVPVDPWPKLDRFREHTIELPVADLVVSPDNETELRRAL
DQTLEVGKGVMHLLAPLDGLHDAISGGRATAKLGAVKVLSTKRACPTCGTSYPELDPRMF
SYNSKHGWCTTCVGTGLALTREQRAVYDDTIVVDDNRGREQSLPSEEQEPEGLVDEPCPD
CAGTRLNPTARAVTFDTQAIVDVAQWTVSDTRAWIDTLEMTGRDAEIARDVVSEIGSRLQ
FLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILL
NALRKLGEKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGSVADLSAQPDSLT
GQFLAQPIVHPLQPRREVVAPGKRTAAVPENWLTVHGGKLHNLRNVTVGIPLSRLVAVTG
VSGSGKSTLARDVLMSNLLDAVGRSVLSSPATRRARAAAEEKPAANRRSSVLARTAPRAP
LNVTHAWQGCDSITGWETIDRVLEVDQTPIGKTPRSCPATYIGVWDAIRKLFAGTLEARA
RGYTASRFSFNTGEGRCPACEGQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGK
NIGDVLTMEIDEAVEFFAPITNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTE
LSKVRDDITRRGQKPPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVIEHDLDV
IAEADWIIDLGPEGGVGGGAIVAATDPEGLSRVAASHTGAALRPVLARSRNNSAVVAGEG
TNG
NT seq 5952 nt   +upstreamnt  +downstreamnt
gtggcccactcattcagacggtcggaaaaattggcatccaacggcaaaaacggcaaaaac
ggctcgagcagtattaacggcacaatcaaaattcgcggcgcacgccagcacaacctcaag
aacgtcgatctcgacgtacgaaccggcgaaatgacggtggtcaccggcccgtccggttcc
ggcaagtcgagcctggtgttcgacacgctgtatgcggaagggcagcggcgctacgtcgaa
acattcagcgcttacgcgcggcagtttctcgaccgcatggaccggccgcaagtcgaccgc
gtcgacggcgtgccgccggccatcgcgatcgaccagaccaatccggtgcgcagttcgcgc
tccaccgtcggcaccatgacggagctcaacgatcacctgaagctgctctacgcgcgtgcc
gccgaactattcgaccgcaagacggctcatcaggtgcgtcacgacacgccggaaacgatc
tacgccgagttgctcgaacgcaccgcgcagaacgaaccgcggctcgtcgtcacgttcccg
gtcgagttgccggaatccgcgtcggagcaggaagtggagcaatggctgtcggccagcggc
tacacgcgcgtgcaggcgcagcgcgaagtcgattcacccaccggcaagcgcaagctgctc
gacgtggtggccgaccgcttccggctgcgctcggtggacaagcaacgggtggtcgaggca
atcgaggcttcgctcaagcgcggcggcggccgcgtcaatatttatgtgctgccggcgtcg
ccggaagggccggaaagccaggaagccgagccgcaaatctggcgtttctccaccggcttg
cacagcccggagagcgacctgcgctacgccgacccgcagcccgcgctgttctcgttcaac
tcagcctacggcgcgtgcgaagtctgccgcggcttcggccgcgtgatcggcgtcgacctc
gggctggtaattccggacgcgcgcaagacgctgcgcgacggcgcgatcaagcccatgcaa
acgcccgcatggaaggagtgccaggacgatttgatgcgctacgcggcgaaagccgatatc
cgtcgcggcacgccttggggcgagttgacggacgccgagcgcgactgggtcatcaacggc
tcgccagattggaacggcaagtggcaaagccactggtacggcgtcaaacgcttcttcgag
tatctcgaatcgaaagcgtacaagatgcatattcgcgtgctgctgtccaagtatcgcagc
tatacgccgtgcgaaacctgcggcggcgcgcgcctgaaaacggaatcgctgttgtggcgc
ctgggtagcaaggcgaatgcggacgacgtgttgccggccgcaaagcgcttcctgccgcgc
ggcgtcgactggacgcgcgggcaactcgaagcgttgccgggtttgaccgtacacgatctg
atgctgatgccgatcgagcgcatccggcacttcttcgacgagatcagcttgccgagtgcc
ttgctcgacgacgcgctcaaactgctgctcgccgaagtgcgcacgcgcctcaagtatcta
tgcgacgtcggcctcggctatctgacgctcgaccggcagagccgcaccttgtcgggcggc
gaggtgcaacggatcaacctgaccacggcgctcggcacctcgctcaccaagacgctgttc
gtgctcgacgagccgagtatcggcttgcatccgcgcgatctgaaccgcatcgtcgaagcc
atgcaccgtttgcgcgatgcgggcaacacgctggtggtggtcgaacacgatccctctgtg
atgctcgcggcggatcgtctgatcgatatgggtccggggccgggcgagcgcggcggctcg
atcatttacgacggcgcgcccgaggcgatccgttcgtcaggcacgctcactggcgagtac
ctcggcggccggcggcatgtggccgacgcggcgcattggtcgcagcgtccggtggatgcc
accacgccgcgcatcgtgctcgaaggcgcgacggaacacaatctgctcgatgtcacggtg
gagattccgttggagcggctcgtctgcgtgacgggcgtgtcgggttccggtaagtccacg
ctcctgcaagacgtgctgtatccggccatggcgcggcacttcggactcgccacggaatcg
ccgggcgcattcagaagcctgagcggcgccgatcaggtcaccgacgtcgtgttcgttgac
cagtcgccgatcggcaagacggcgcgctcgaatccggcgagttacgtcggtgcgttcgac
gagatccgcaaactgttcgccaaggcgccgctcgcgcagcagcgcggttacggccccggc
atgttcagtttcaattcgggcgaaggtcgctgcccgacttgtggcggctcgggtttcgaa
catatcgaaatgcagtttctgagcgacgtatacctgcgctgccccgattgcgacgggcgc
cgctatcgcgcggaactgctcgaagtcaagatcgagcgcggcgaaccggcgcgcgcgctg
agcattgccgacgtgctggaattgacggtgagcgaagccaccacgtacttcgctaaagac
gccgaagtgttgcgcgtactgcagccgatcgtcgacgtgggcctcgaatacgtgaagctc
ggccagccggtgcctacgttgtcgggcggtgaagcgcagcggctcaagctcgccggtttc
ctcgcggaatccgcgcaggcgcggaccgcgcgcagtgcgaagcaagcggtcgcgaagcgt
ctgttcatgttcgacgagccgaccacgggtctccatttcgacgacatcgccaagctgatg
caggcgttcggcaagctgctcgcaagcggccattcgctgatcgtgatcgaacacaatctc
gacgtgatccgcgcggccgactggctgatcgacctcggtcccgaaggcggtgacggcggc
ggccgtgtgctgtgcgcgggcacgccggaagacgtcaaaacgtgttcggagtcgcatact
ggcgaagcgctgctgcaatacgaccgcgccatgggcgcggcggccgaaccggcgtcgcaa
ggcattccgttgcaaaaagcgctgagcgcggcgcgcgcgcgcagggcgatcgaaggcgag
gacgtggtgcgtatcgtcaatgcgcgcgagcacaacctgaaatcgctggacgtggacatt
ccgcacggcaaattcaacgtgattaccggcgtgtccggttcgggcaagtccacgctcgct
ttcgacattctgttccacgaaggacagcgccgttacctcgaatcgctgaacgcctacgcg
cgttccatcgtgcagccggcggggcgtcccgaggtcgacgcggtgtacggcattccgccg
accgtcgcgatcgaacagcggctctcgcgcggcggccgcaagagtacggtcgcgaccacg
tccgaggtgtggcacttcctgcgtctgctgtatgtgaagctcggtctgcagcattgcatt
cacgacggcacgccggtcacgtcgcagagcgtcgaatcgatcgcggcgcagttgctgcgc
gatcacaaagggcagcatgtcggttttctggcgccgctggtcgtgaatcgtaaaggcgtc
tacacggatctggcgaagtgggcgaaggcgcgtggcaatacccatctgcgtgtggatggc
gaattcgtgccggtggacccgtggccgaagctcgaccgtttccgcgaacatacgatcgag
ttgccggtggccgatctcgtcgtgtcgccggacaatgaaaccgaactgcgtcgggcgctc
gatcagacgttggaagtcggcaaaggcgtgatgcatctgctggcgcctttagacggtttg
cacgacgcgatcagcggcggccgcgccacggcgaaactcggcgcggtcaaggtgctgtcc
accaagcgtgcgtgtccgacgtgcggcacgagttatccggaactcgatccgcgcatgttc
tcgtacaacagcaagcatggctggtgtaccacctgcgtcggcacgggtctcgcgctcacg
cgcgaacaacgcgcggtgtacgacgatacgattgtcgtcgacgacaatcgtggccgcgag
caaagcctgccgtcggaagagcaggagcccgaaggtctcgtggacgaaccgtgtccggat
tgcgccggcacgcgtctgaatcccacggcacgcgcggtcacgttcgacacgcaggcgatt
gtcgatgtcgcgcaatggaccgtatccgacacgcgcgcctggatcgacacgctggaaatg
accggtcgcgatgcggaaatcgcgcgtgacgtagtgagcgaaatcggcagccgtctgcag
tttctcgaagaagtgggcctcggctatttgagtctcgatcgtgcggcgccgagtctgtcg
ggcggcgaagcgcagcgcatccggcttgccgcgcagctcggcagcaacctgcaaggcgtc
tgctatgtgctcgacgaaccgaccatcggtctgcatccgcgcgacaaccagattctgctg
aacgctttgcgcaagctcggtgaaaagggcaatacgctggtggtcgtcgagcacgacgag
gacacgatccggcgtgccgatcacatcatcgacatcggcccgggcgctggcaaacgcggc
ggcacgctggtcgcgcaaggcagtgtggcggatctgtcggcgcagcccgattcgctgacc
ggacagtttctcgcgcagcccatcgtgcacccgctgcagccgcgtcgcgaagtggtcgcg
ccgggcaagcgcacggccgcggtgccggagaactggctgaccgtgcatggcggcaagttg
cataacttgcgcaacgttacggtcggcattcctttgtcgcgactcgtcgcggtcactggc
gtcagcggttccggcaaatcgacgctcgcacgcgacgtgctgatgagcaacctgctggat
gccgtcgggcgttcggtgttgtcatcgccggccacgcggcgcgcgcgcgcggcggccgaa
gaaaaaccggcagcgaaccggcgttccagcgtgctggcgcgtacggcgccgcgcgcgccg
ctaaacgttacgcatgcgtggcaaggctgcgattcgatcaccggctgggaaaccatcgac
cgcgtactcgaggtcgatcaaacgccgatcggcaagacaccgcgttcgtgtccggccact
tacatcggcgtgtgggacgcaatccgcaagctgttcgccggcacgctcgaagcgcgcgcg
cgtggctatacggcctcgcgtttctcgtttaacaccggcgaaggccgttgcccggcttgc
gaggggcagggcgtgcgtaccatcggcatgagcttcctgcccgatgtgaaggtgccttgc
gacgtgtgtcacgggcagcgcttcaatccggaaacgctcgcggttacgtggcgcggcaag
aatatcggcgacgtactgaccatggaaatcgacgaagccgtcgagttctttgcgcccatc
acgaatattgctcatccattgcagttgatgaaagacgtagggcttggctatctcacgctg
ggtcagccgtcgcccacgttgtccggcggcgaggcgcaacgtatcaagctcgttaccgaa
ttgagcaaggtgcgcgacgacattacgcggcgcgggcagaagccgccgcatacgctatat
gtgctggacgaaccgaccgtgggcctgcatatggccgacgtcgccaagctgattcgcgtg
ctgcatcgtctcgcggacggcggccatagcgtcgttgtcatcgagcacgatctggatgtg
atcgccgaggcggactggatcatcgacctcggtcctgaaggcggcgtaggcggtggggcg
attgtcgctgctacggatcccgaaggactgtcgcgcgttgcggcgagtcacacgggcgcc
gcgttacggccggttctcgcacgatcgcgtaacaacagtgctgtcgtggcgggcgagggt
acgaacggttaa

DBGET integrated database retrieval system