Paraburkholderia phytofirmans PsJN: Bphyt_1438
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Entry
Bphyt_1438 CDS
T00765
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bphyt_1438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_1438
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bphyt_1438
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphyt_1438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
AAA_21
AAA_16
nSTAND1
AAA_22
AAA_33
RsgA_GTPase
AAA_18
AAA_23
NACHT
Viral_helicase1
AAA_25
UvrA_DNA-bind
nSTAND3
ATPase
DnaJ_CXXCXGXG
DUF4350
SbcC_Walker_B
RNA12
DUF87
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ACD15853
UniProt:
B2T2P2
LinkDB
All DBs
Position
1:1608635..1614586
Genome browser
AA seq
1983 aa
AA seq
DB search
MAHSFRRSEKLASNGKNGKNGSSSINGTIKIRGARQHNLKNVDLDVRTGEMTVVTGPSGS
GKSSLVFDTLYAEGQRRYVETFSAYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSR
STVGTMTELNDHLKLLYARAAELFDRKTAHQVRHDTPETIYAELLERTAQNEPRLVVTFP
VELPESASEQEVEQWLSASGYTRVQAQREVDSPTGKRKLLDVVADRFRLRSVDKQRVVEA
IEASLKRGGGRVNIYVLPASPEGPESQEAEPQIWRFSTGLHSPESDLRYADPQPALFSFN
SAYGACEVCRGFGRVIGVDLGLVIPDARKTLRDGAIKPMQTPAWKECQDDLMRYAAKADI
RRGTPWGELTDAERDWVINGSPDWNGKWQSHWYGVKRFFEYLESKAYKMHIRVLLSKYRS
YTPCETCGGARLKTESLLWRLGSKANADDVLPAAKRFLPRGVDWTRGQLEALPGLTVHDL
MLMPIERIRHFFDEISLPSALLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGG
EVQRINLTTALGTSLTKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSV
MLAADRLIDMGPGPGERGGSIIYDGAPEAIRSSGTLTGEYLGGRRHVADAAHWSQRPVDA
TTPRIVLEGATEHNLLDVTVEIPLERLVCVTGVSGSGKSTLLQDVLYPAMARHFGLATES
PGAFRSLSGADQVTDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPLAQQRGYGPG
MFSFNSGEGRCPTCGGSGFEHIEMQFLSDVYLRCPDCDGRRYRAELLEVKIERGEPARAL
SIADVLELTVSEATTYFAKDAEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGF
LAESAQARTARSAKQAVAKRLFMFDEPTTGLHFDDIAKLMQAFGKLLASGHSLIVIEHNL
DVIRAADWLIDLGPEGGDGGGRVLCAGTPEDVKTCSESHTGEALLQYDRAMGAAAEPASQ
GIPLQKALSAARARRAIEGEDVVRIVNAREHNLKSLDVDIPHGKFNVITGVSGSGKSTLA
FDILFHEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATT
SEVWHFLRLLYVKLGLQHCIHDGTPVTSQSVESIAAQLLRDHKGQHVGFLAPLVVNRKGV
YTDLAKWAKARGNTHLRVDGEFVPVDPWPKLDRFREHTIELPVADLVVSPDNETELRRAL
DQTLEVGKGVMHLLAPLDGLHDAISGGRATAKLGAVKVLSTKRACPTCGTSYPELDPRMF
SYNSKHGWCTTCVGTGLALTREQRAVYDDTIVVDDNRGREQSLPSEEQEPEGLVDEPCPD
CAGTRLNPTARAVTFDTQAIVDVAQWTVSDTRAWIDTLEMTGRDAEIARDVVSEIGSRLQ
FLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILL
NALRKLGEKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGSVADLSAQPDSLT
GQFLAQPIVHPLQPRREVVAPGKRTAAVPENWLTVHGGKLHNLRNVTVGIPLSRLVAVTG
VSGSGKSTLARDVLMSNLLDAVGRSVLSSPATRRARAAAEEKPAANRRSSVLARTAPRAP
LNVTHAWQGCDSITGWETIDRVLEVDQTPIGKTPRSCPATYIGVWDAIRKLFAGTLEARA
RGYTASRFSFNTGEGRCPACEGQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGK
NIGDVLTMEIDEAVEFFAPITNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTE
LSKVRDDITRRGQKPPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVIEHDLDV
IAEADWIIDLGPEGGVGGGAIVAATDPEGLSRVAASHTGAALRPVLARSRNNSAVVAGEG
TNG
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
gtggcccactcattcagacggtcggaaaaattggcatccaacggcaaaaacggcaaaaac
ggctcgagcagtattaacggcacaatcaaaattcgcggcgcacgccagcacaacctcaag
aacgtcgatctcgacgtacgaaccggcgaaatgacggtggtcaccggcccgtccggttcc
ggcaagtcgagcctggtgttcgacacgctgtatgcggaagggcagcggcgctacgtcgaa
acattcagcgcttacgcgcggcagtttctcgaccgcatggaccggccgcaagtcgaccgc
gtcgacggcgtgccgccggccatcgcgatcgaccagaccaatccggtgcgcagttcgcgc
tccaccgtcggcaccatgacggagctcaacgatcacctgaagctgctctacgcgcgtgcc
gccgaactattcgaccgcaagacggctcatcaggtgcgtcacgacacgccggaaacgatc
tacgccgagttgctcgaacgcaccgcgcagaacgaaccgcggctcgtcgtcacgttcccg
gtcgagttgccggaatccgcgtcggagcaggaagtggagcaatggctgtcggccagcggc
tacacgcgcgtgcaggcgcagcgcgaagtcgattcacccaccggcaagcgcaagctgctc
gacgtggtggccgaccgcttccggctgcgctcggtggacaagcaacgggtggtcgaggca
atcgaggcttcgctcaagcgcggcggcggccgcgtcaatatttatgtgctgccggcgtcg
ccggaagggccggaaagccaggaagccgagccgcaaatctggcgtttctccaccggcttg
cacagcccggagagcgacctgcgctacgccgacccgcagcccgcgctgttctcgttcaac
tcagcctacggcgcgtgcgaagtctgccgcggcttcggccgcgtgatcggcgtcgacctc
gggctggtaattccggacgcgcgcaagacgctgcgcgacggcgcgatcaagcccatgcaa
acgcccgcatggaaggagtgccaggacgatttgatgcgctacgcggcgaaagccgatatc
cgtcgcggcacgccttggggcgagttgacggacgccgagcgcgactgggtcatcaacggc
tcgccagattggaacggcaagtggcaaagccactggtacggcgtcaaacgcttcttcgag
tatctcgaatcgaaagcgtacaagatgcatattcgcgtgctgctgtccaagtatcgcagc
tatacgccgtgcgaaacctgcggcggcgcgcgcctgaaaacggaatcgctgttgtggcgc
ctgggtagcaaggcgaatgcggacgacgtgttgccggccgcaaagcgcttcctgccgcgc
ggcgtcgactggacgcgcgggcaactcgaagcgttgccgggtttgaccgtacacgatctg
atgctgatgccgatcgagcgcatccggcacttcttcgacgagatcagcttgccgagtgcc
ttgctcgacgacgcgctcaaactgctgctcgccgaagtgcgcacgcgcctcaagtatcta
tgcgacgtcggcctcggctatctgacgctcgaccggcagagccgcaccttgtcgggcggc
gaggtgcaacggatcaacctgaccacggcgctcggcacctcgctcaccaagacgctgttc
gtgctcgacgagccgagtatcggcttgcatccgcgcgatctgaaccgcatcgtcgaagcc
atgcaccgtttgcgcgatgcgggcaacacgctggtggtggtcgaacacgatccctctgtg
atgctcgcggcggatcgtctgatcgatatgggtccggggccgggcgagcgcggcggctcg
atcatttacgacggcgcgcccgaggcgatccgttcgtcaggcacgctcactggcgagtac
ctcggcggccggcggcatgtggccgacgcggcgcattggtcgcagcgtccggtggatgcc
accacgccgcgcatcgtgctcgaaggcgcgacggaacacaatctgctcgatgtcacggtg
gagattccgttggagcggctcgtctgcgtgacgggcgtgtcgggttccggtaagtccacg
ctcctgcaagacgtgctgtatccggccatggcgcggcacttcggactcgccacggaatcg
ccgggcgcattcagaagcctgagcggcgccgatcaggtcaccgacgtcgtgttcgttgac
cagtcgccgatcggcaagacggcgcgctcgaatccggcgagttacgtcggtgcgttcgac
gagatccgcaaactgttcgccaaggcgccgctcgcgcagcagcgcggttacggccccggc
atgttcagtttcaattcgggcgaaggtcgctgcccgacttgtggcggctcgggtttcgaa
catatcgaaatgcagtttctgagcgacgtatacctgcgctgccccgattgcgacgggcgc
cgctatcgcgcggaactgctcgaagtcaagatcgagcgcggcgaaccggcgcgcgcgctg
agcattgccgacgtgctggaattgacggtgagcgaagccaccacgtacttcgctaaagac
gccgaagtgttgcgcgtactgcagccgatcgtcgacgtgggcctcgaatacgtgaagctc
ggccagccggtgcctacgttgtcgggcggtgaagcgcagcggctcaagctcgccggtttc
ctcgcggaatccgcgcaggcgcggaccgcgcgcagtgcgaagcaagcggtcgcgaagcgt
ctgttcatgttcgacgagccgaccacgggtctccatttcgacgacatcgccaagctgatg
caggcgttcggcaagctgctcgcaagcggccattcgctgatcgtgatcgaacacaatctc
gacgtgatccgcgcggccgactggctgatcgacctcggtcccgaaggcggtgacggcggc
ggccgtgtgctgtgcgcgggcacgccggaagacgtcaaaacgtgttcggagtcgcatact
ggcgaagcgctgctgcaatacgaccgcgccatgggcgcggcggccgaaccggcgtcgcaa
ggcattccgttgcaaaaagcgctgagcgcggcgcgcgcgcgcagggcgatcgaaggcgag
gacgtggtgcgtatcgtcaatgcgcgcgagcacaacctgaaatcgctggacgtggacatt
ccgcacggcaaattcaacgtgattaccggcgtgtccggttcgggcaagtccacgctcgct
ttcgacattctgttccacgaaggacagcgccgttacctcgaatcgctgaacgcctacgcg
cgttccatcgtgcagccggcggggcgtcccgaggtcgacgcggtgtacggcattccgccg
accgtcgcgatcgaacagcggctctcgcgcggcggccgcaagagtacggtcgcgaccacg
tccgaggtgtggcacttcctgcgtctgctgtatgtgaagctcggtctgcagcattgcatt
cacgacggcacgccggtcacgtcgcagagcgtcgaatcgatcgcggcgcagttgctgcgc
gatcacaaagggcagcatgtcggttttctggcgccgctggtcgtgaatcgtaaaggcgtc
tacacggatctggcgaagtgggcgaaggcgcgtggcaatacccatctgcgtgtggatggc
gaattcgtgccggtggacccgtggccgaagctcgaccgtttccgcgaacatacgatcgag
ttgccggtggccgatctcgtcgtgtcgccggacaatgaaaccgaactgcgtcgggcgctc
gatcagacgttggaagtcggcaaaggcgtgatgcatctgctggcgcctttagacggtttg
cacgacgcgatcagcggcggccgcgccacggcgaaactcggcgcggtcaaggtgctgtcc
accaagcgtgcgtgtccgacgtgcggcacgagttatccggaactcgatccgcgcatgttc
tcgtacaacagcaagcatggctggtgtaccacctgcgtcggcacgggtctcgcgctcacg
cgcgaacaacgcgcggtgtacgacgatacgattgtcgtcgacgacaatcgtggccgcgag
caaagcctgccgtcggaagagcaggagcccgaaggtctcgtggacgaaccgtgtccggat
tgcgccggcacgcgtctgaatcccacggcacgcgcggtcacgttcgacacgcaggcgatt
gtcgatgtcgcgcaatggaccgtatccgacacgcgcgcctggatcgacacgctggaaatg
accggtcgcgatgcggaaatcgcgcgtgacgtagtgagcgaaatcggcagccgtctgcag
tttctcgaagaagtgggcctcggctatttgagtctcgatcgtgcggcgccgagtctgtcg
ggcggcgaagcgcagcgcatccggcttgccgcgcagctcggcagcaacctgcaaggcgtc
tgctatgtgctcgacgaaccgaccatcggtctgcatccgcgcgacaaccagattctgctg
aacgctttgcgcaagctcggtgaaaagggcaatacgctggtggtcgtcgagcacgacgag
gacacgatccggcgtgccgatcacatcatcgacatcggcccgggcgctggcaaacgcggc
ggcacgctggtcgcgcaaggcagtgtggcggatctgtcggcgcagcccgattcgctgacc
ggacagtttctcgcgcagcccatcgtgcacccgctgcagccgcgtcgcgaagtggtcgcg
ccgggcaagcgcacggccgcggtgccggagaactggctgaccgtgcatggcggcaagttg
cataacttgcgcaacgttacggtcggcattcctttgtcgcgactcgtcgcggtcactggc
gtcagcggttccggcaaatcgacgctcgcacgcgacgtgctgatgagcaacctgctggat
gccgtcgggcgttcggtgttgtcatcgccggccacgcggcgcgcgcgcgcggcggccgaa
gaaaaaccggcagcgaaccggcgttccagcgtgctggcgcgtacggcgccgcgcgcgccg
ctaaacgttacgcatgcgtggcaaggctgcgattcgatcaccggctgggaaaccatcgac
cgcgtactcgaggtcgatcaaacgccgatcggcaagacaccgcgttcgtgtccggccact
tacatcggcgtgtgggacgcaatccgcaagctgttcgccggcacgctcgaagcgcgcgcg
cgtggctatacggcctcgcgtttctcgtttaacaccggcgaaggccgttgcccggcttgc
gaggggcagggcgtgcgtaccatcggcatgagcttcctgcccgatgtgaaggtgccttgc
gacgtgtgtcacgggcagcgcttcaatccggaaacgctcgcggttacgtggcgcggcaag
aatatcggcgacgtactgaccatggaaatcgacgaagccgtcgagttctttgcgcccatc
acgaatattgctcatccattgcagttgatgaaagacgtagggcttggctatctcacgctg
ggtcagccgtcgcccacgttgtccggcggcgaggcgcaacgtatcaagctcgttaccgaa
ttgagcaaggtgcgcgacgacattacgcggcgcgggcagaagccgccgcatacgctatat
gtgctggacgaaccgaccgtgggcctgcatatggccgacgtcgccaagctgattcgcgtg
ctgcatcgtctcgcggacggcggccatagcgtcgttgtcatcgagcacgatctggatgtg
atcgccgaggcggactggatcatcgacctcggtcctgaaggcggcgtaggcggtggggcg
attgtcgctgctacggatcccgaaggactgtcgcgcgttgcggcgagtcacacgggcgcc
gcgttacggccggttctcgcacgatcgcgtaacaacagtgctgtcgtggcgggcgagggt
acgaacggttaa
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