Paraburkholderia phytofirmans PsJN: Bphyt_3954
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Entry
Bphyt_3954 CDS
T00765
Name
(GenBank) AlkA domain protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bphyt_3954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_3954
Enzymes [BR:
bpy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Bphyt_3954
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Bphyt_3954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HhH-GPD
BTH_I2711-like
Motif
Other DBs
NCBI-ProteinID:
ACD18341
UniProt:
B2T7R0
LinkDB
All DBs
Position
1:complement(4429605..4430522)
Genome browser
AA seq
305 aa
AA seq
DB search
MSTLDEVATLELPFKPPFDWPRLLRFFGGRATPGVEAVEDGAYRRAIAWAGDSGTLSVRQ
HPRKRCLVASMEGPVSRHADALAAPIAKMFDLHADPKKIGAELAADPWLAPLVEAVPGLR
VPGAWSGFELVVRAIVGQQVSVKAATTIIGRLVQRAGERIEGHPHENTAWRFPTPAALAA
VDLAQIGMPGKRVAALQGFAHAVATGDVPLDSNTADAGSLRAALLALPGIGPWTVEYVAM
RAWRDADAWPAWDLVLMQSICARDPSLVRPTQQRARTDTWRPWRAYAAMHLWNEVADRAG
AARGG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacgcttgacgaagtcgctacccttgaattgccgttcaaaccacctttcgactgg
ccgcgcctgctgcgtttcttcggcggacgcgcgacgcccggcgtcgaagcggtggaagac
ggcgcgtaccgtcgcgcgatcgcctgggccggcgacagcggcacgctgagcgtgcgtcag
catccacgcaagcgttgcctggtcgcgagcatggaagggccggtgagccgtcacgccgac
gcactcgccgcgccgattgcaaagatgttcgacctgcacgccgatccgaaaaagatcggc
gcagaactcgccgctgacccatggctcgcgccactggtcgaagccgtgcccggcttgcgc
gtgccgggcgcgtggtcgggcttcgagctggtggtgcgcgcaatcgtcgggcagcaggtc
agcgtgaaggcggcgaccactatcatcggcagactggtgcagcgcgcgggcgagcgcatc
gaggggcatccgcatgagaacaccgcctggcgttttccgacgcccgccgcgctggccgcc
gtggatcttgcgcaaatcggcatgccgggtaaacgtgtagcggcgttgcagggtttcgcg
cacgcggtcgccaccggtgatgtgccgctcgacagcaacacggccgacgccggcagtctg
cgcgccgcgctgctcgcgctgcccggcatcggcccgtggaccgtcgagtatgtggccatg
cgcgcatggcgcgatgccgacgcgtggcccgcatgggacctcgtgctgatgcagtcgatc
tgcgcgcgcgatccgtcgctcgtgcggcccacgcagcagcgcgcccgcaccgacacatgg
cggccgtggcgtgcgtacgcggcgatgcatctgtggaatgaagtagcggaccgcgcgggc
gccgcgcgtggcgggtaa
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