Burkholderia pyrrocinia: ABD05_33050
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Entry
ABD05_33050 CDS
T03962
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABD05_33050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyr03019
]
ABD05_33050
Messenger RNA biogenesis [BR:
bpyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABD05_33050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKM05032
UniProt:
A0A0G3X283
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All DBs
Position
3:complement(656010..657455)
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AA seq
481 aa
AA seq
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MSFASLGLIDPLLRNVQDRNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRVRVLVLVPTRELAEQVLQSFVDYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPTQR
QTLLFSATFTDDIRTMAAGILRGPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMHLVA
ENNWEHALVFVKTRKGVDYLAAMLDEAGYAIDTIHGDKPQPARLRALERFKTGEVNMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPETSATGQIVKKPKKPKKPKVPQAASGATQVPGKKPRPQ
GGENKRKPAAQRAVAAGKGAGLSSGNPFGVQKPRSKPAGKSAAGSRKPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatcccctgctgcgtaatgtgcaggaccgcaat
taccagacacccacgccggtgcaggccaaggcgattcctgcagtgctcagcggcaaggac
gtcatggccgcggcacagaccggcaccggcaagacggcgggtttcgcgcttcccctgttg
cagcggctggtgcaacacgggccggcggtgtccagcaaccgcgtgcgcgttctggtgctg
gtgcccacgcgtgagctggctgaacaggtgctgcaaagctttgtcgattacggcaaaggc
ctcgacttgcgatttctggccgcctacggcggtgtgagcatcaacccgcagatgatgaag
ttgcgcaagggcgtggatgtgctcgttgccacgccgggccgtttgctggatctcaatcgc
cagaacgcagtgcagttcgatcaggtacaaacgctggtgctggatgaagccgaccgcatg
ctggatctcggctttgcgcgcgaactcaatgctgtctttgctgcgttgcccacccagcgc
cagactctgctgttctccgccacgtttaccgacgatatccgcacgatggcggcgggcatt
ctgcgcggcccggtcaatatcagcgtcagcccgcccaatgtcacggccagcaagatcaag
cagtgggtggtgacggtggataaaaggaacaagcccgacctcttcatgcacctcgtggcc
gagaacaactgggagcacgcgctggtgttcgtcaaaacccgcaaaggcgtggattacctg
gcggccatgctggatgaagcgggctatgcgatcgacaccatccacggcgacaaaccgcaa
cccgcgcgcctgcgtgcgctggagcgcttcaagacgggcgaagtcaatatgctggtcgcc
accgatgtggctgcgcgcgggctggatatcgacgatctgccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaagactatgtgcaccgtatcggccgtaccggccgcgcgggcgcc
agcggcgtggcggtgtccctcgtgtgtgccgacgaagcgccgcaactggccgcgatcgaa
gcgctgatccggcaaacgctgccccgtgaagaagagccgggttttgaagccgaacaccgc
gtgccggaaaccagcgcaacgggccagatcgtcaagaagcccaaaaagccgaagaagccc
aaagtgccgcaagctgcgtcgggcgccacgcaggtgcccggcaaaaagccgcgcccgcaa
ggcggcgaaaacaaacgcaagcctgcggcgcagcgcgcagtagccgcaggtaaaggcgca
ggtttgtccagcggtaacccattcggcgtgcagaagccacgcagcaaacccgccggcaag
tcggccgcgggttcacgcaagccggctggcaagcccgctggtggccgcggcaaacgtcag
ccctga
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