Bradyrhizobium sp. BF49: BF49_6902
Help
Entry
BF49_6902 CDS
T04337
Name
(GenBank) Transcriptionrepair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF49_6902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brad03400
]
BF49_6902
Enzymes [BR:
brad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF49_6902
DNA repair and recombination proteins [BR:
brad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BF49_6902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CUT15822
LinkDB
All DBs
Position
I:7039716..7043234
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVVSDLARAIAARPKKPAVSLAVVCRDGPRM
QQLERALQFFAPDLPVLTFPAWDCQPYDRVSPHGGVLAQRLTTLARLASLTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIIAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAIRERFKQILDYYQARRDAMEHPGGGAIYKPLPPDRLYLTEEEWGKRESGMPLVRLTQF
SVPADGTSVVDAGARKGRDFAPERNDNKVNVFEAVVAHVHGLLTSRKKVVIALWTEGSRD
RMTSMLRDHKLTPVTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLAAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTSVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAERHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHYKTFTERFKGFPVQVAQASRLVPAKQLNLVKKG
LTDGAVDIVVGTHALLSKSIKFRDLGLLIVDEEQHFGVTHKERLKQLRAEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNILGEQQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPTITIGMPVLIPEDYVGDLSVRLSLYRRLADLDSEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRQANVGKIDAGPKGAVIAFRDNSFAHPDRLVSFIRSHGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAQSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggggatgaaatcgccggccgagctgctcacgcccggccgcgcgctgacgctt
gccaatgtcgccgagggtgccgagggcctcgttgtctccgatctcgcgcgcgccatcgcg
gcgcggccgaagaagccggctgtcagcctcgcggtggtctgccgcgacgggccgcggatg
cagcagctcgaacgggccctgcaattcttcgcgcccgatttgcccgtgctgaccttcccg
gcctgggactgccaaccctatgaccgcgtctcgccccatggcggcgtcctcgcgcagcgc
ctgacgacgctggcgcgccttgcgtcactgaccggcagcgacaagccgctgatcgtgctg
accacggtgaacgccgtcgtccagcgcgtgccggcgcgcgagctcgtcgcggcgcaggcg
ctgtcggtcgcgccgggcaacgtcgtgccgatggacaccatcatcgcctggctcgagcac
aacggctacaaccgctcctcgaccgtgcgcgagcccggcgaatatgccgtgcgcggcggc
attctggacctgtttccggccggcctcgaccagcccgtccgcttcgacttcttcggcgac
agcctggaatcgatccgcaccttcgatgccgagacccagcgcacgctgctggacatgcgc
gcgctcgatctcgtgccgatctccgaattccagctcgtcacggacaccatccgccgcttt
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgacgcgctctacgaggcc
gtcagcgaggggcgccgtcatcccggcatggagcattggctgccgctgttccaggaccgc
atggatacgctgttcgactatctgcaaggggcagccgtcgcgatcgagccgcaggccgag
gacgccatccgcgagcgcttcaagcagatcctcgactattaccaggcccgccgcgatgcg
atggagcatccgggcggcggtgccatctacaagccgctgccgcctgacaggctctatctg
accgaggaggagtggggcaagcgcgagagcgggatgccgttggtgcgactgacgcaattt
tcggtgcctgccgatggtaccagcgtggtcgatgccggcgcacgcaagggacgagacttc
gcgccggagcgcaacgacaataaggtcaatgtcttcgaagccgtcgtcgcacatgtgcat
gggctgctgacaagccgcaagaaggtggtcatcgcgctctggacggagggctcgcgcgac
cgtatgacctcgatgctgcgcgatcacaagctcacgcctgtgaccagcgtcaacagctgg
cgcacggtgcaggcgaccccgcgcaacgagaccatgctcgccgtgctcggcctcgaaagc
ggtttcgagaccgacgagatcgcgctcatcagcgagcaggatatccttggcgatcgcctg
gtccggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gccgccggcgacatcgtggttcacgtcgatcacggcatcggccgcttcatcggcttgcag
acgctcgacgtcgccggcgcgccacatgactgcctcgagctgcattatgccgccgagacc
aagctgttcctgccggtcgagaacatcgagctgctgtcgcgctatggctccgaccagacc
tcggtcgaactcgatcgtctcggcggctcgggctggcagacgcgcaaggccaagctcaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgccgccgagcgccacctgcac
gaggcgccaaagctgccggtgcagccgggcctctatgacgaattctgcgcgcgcttcccc
tatgacgagaccgaggatcagcttggcgcgatcgagtccacgctgaaggacctcgagctc
ggccgtcccatggaccggctgatctgcggcgacgtcggcttcggtaagaccgaggtggcg
ctgcgcgccgccttcgcggtggcgctcgaaggcaagcaggtcgcggtcgtggtgccgacc
acgctgctagctcgccagcactacaagacgttcaccgagcgtttcaagggtttcccggtg
caggtcgcgcaggcctcgcggctggtcccggccaagcagctcaatctggtcaagaagggc
ctcaccgacggcgcggtcgatatcgtcgtcggcacccacgcgctgctcagcaagtcgatc
aagttccgcgatctcgggctgctgatcgtcgacgaggagcagcatttcggcgtcacccac
aaggagcggctgaagcagctccgcgccgaggtgcacgtgctgacgctgtcggcgacgccg
atcccgcgcacgcttcaattggcgctcaccggcgtgcgcgagctctcgatcatcgcatcg
cccccggtcgaccgcctcgcggtccgcaccttcgtcgctccgcacgatcccttgatgatc
cgcgaggcgctgctgcgcgagcgctatcgtggcggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggaaatgaaggtc
gcggtcgcgcacggacagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgctgtcgaccacgatcgtggaatccggactcgacatcccc
aacgccaacacgctgatcgtgcatcgcgccgacatgttcggcctcgcccagctctatcag
ctccgcggccgcgtcggccgttccaagctgcgggcctatgcgctgttcacgctgccggcg
cagcagaagatcacggcgcaggccgagcgccggctcaccgtgctgcaatcgctggagacg
ctgggcgcgggcttccagctcgcctcgcacgacctcgatatccgcggcgccggcaacatc
ctgggcgagcagcagtccggccatatcaaggaggtcggcttcgagctctaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggctggcgtgtcggagcccgccgccgatcgctgg
tcgccgaccatcaccatcggcatgcccgtgctgattccggaggactatgtcggcgatctc
tcggtgcgactgtcgctctaccggcggctcgccgacctcgacagcgaggaggagatcgag
aacttcggcgccgagatgcgcgaccgtttcggcgtgctgccggacgaggtgcgctatttg
ttcaaggtcgccgcgatcaaggcgttctgccgccaagccaatgtcggcaagatcgacgcc
ggcccgaagggcgccgtcatcgccttccgcgacaattcctttgctcaccccgatcgcctg
gtgagcttcatccgcagccacggccaggccgcgaaggtgcggcccgacatgaaggtggtg
ttcctgcaggactgggagacgccggaagagcgtctcgccggcaccaccgagatcatgcgc
cagctggcgcagctcgcgcagagcaagaaggcggcgtga
DBGET
integrated database retrieval system
