Brevundimonas sp. MF30-B: E4M01_09065
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Entry
E4M01_09065 CDS
T06201
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brf
Brevundimonas sp. MF30-B
Pathway
brf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E4M01_09065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brf03400
]
E4M01_09065 (mfd)
Enzymes [BR:
brf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E4M01_09065 (mfd)
DNA repair and recombination proteins [BR:
brf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E4M01_09065 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_25
UB2H
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBX37899
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All DBs
Position
1784021..1787488
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AA seq
1155 aa
AA seq
DB search
MDAQLTNPRVDIELGGSPEGLDALVVAERVKANGGVALFVARDYQRSGAFVQAFQFFAKD
IEVLEYPSWDCLPYDRLSPTASVSAQRMATLTRLAQGPKDDRPLLVVATIAAAAQRTPPR
SVTTAAGFEARIGRDLEMAALEKYFSTNGYVRASTVSERGEYAVRGGVVDVFPPGFDEPV
RLDMFGSELESIRAFDPETQRSTRQLKSVSLSPVSEVLLDRESISRFRSGYLNLFGASGD
DPLYVSISEGARRQGMEQWLPLFYDRLDTLFDYLPDDAPVFLDNQVEAARAERWTLIDDA
YDARQEAAKAKRAAGAPVGANRALPPERLYLTAEDWNSELAGRAVRRLTPFDTQGEDAGG
RLGRSFAAERAQDSVNLFEAVARHAEALKEQGKRVLFASWSEGSSERLAAMLADHGLTHV
VAVRDWADVQAAPKDLYLRGVLPVEHGFVTDDLAVISETDILGDRLARPRKKRRASNFLA
EASALTTGDLVVHLDHGIGRYEGLRTLDIQDAPHDCLELLYAGDSKLYLPVENIDLLTRY
GSDSEGVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRVTESVTPPSGLFDEF
CARFPYEETDDQLNAIGDVLEDLGRGTPMDRLICGDVGFGKTEVALRAAFVVAMTGKQVA
IVAPTTLLARQHFKTFTERFAGWPVKVRQLSRLVTSKEANETRAGLKDGSVEIVVGTHAV
LAEQVGFKDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREM
SIIATPPVDRLAVRTYVTPFDPVMVREALLREKYRGGQAYYVAPRLKDLPDIEKFLREQV
PEVKFVVGHGQMSATQLEEVMSAFYDGQYDVLVSTTIVESGLDIPTANTLVVHRADMFGL
AQLYQIRGRVGRSKARAFAYLTSDPIKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQR
GGGNLLGDEQSGHIREVGVELYQQMLEDAVADLKADGEGEAVDRGWSPAINVGAAVLIPE
DYVLDLNVRLSLYRRLSDAENTEDREALAAELIDRFGPLPDEAKQLLRIVGIKAACKTAC
IEKIDVGPKGAVLTLRENRFPNPAGLIGLIQKNQAFWKIRPDQKIVVKGDWPTPEDRLKV
AERIMSDLARVAAAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcagctcacgaacccgcgcgtcgatatcgaactgggcggctcgcccgagggc
ctggacgccctggtggtggccgagcgcgtaaaggcgaatggcggtgtggctctgttcgtg
gcgcgcgactaccaacgctcaggagcctttgttcaggcgtttcagttcttcgccaaggat
attgaagtccttgaatatccgtcctgggactgtctgccctacgacaggcttagccccacc
gcgtcggtttctgcccagcgcatggcgacgctgacgcgtctggcccaaggaccgaaggat
gaccgaccgctgctggtggtcgccaccatcgcggcagccgcccagcgcacgccgccgcgt
tcggtcacgaccgccgcaggtttcgaggcgcgcatcggccgcgatctggaaatggcggcg
ctcgagaaatacttcagcaccaacggctatgtccgtgcctcgaccgtgtcggaacgcggc
gagtacgcggtgcgcggcggggtggtcgatgtcttcccgccgggctttgacgagccggtt
cgcctggacatgttcggctcggagctggaatcgatccgcgccttcgatcccgagacccag
cggtcgacgcgtcagctgaaatcggtctcgctgtcgccggtgtccgaggtgttgctggat
cgcgaaagcatttcgcgtttccgcagcggctatctgaacctgttcggcgcgtcgggcgac
gatccgctgtatgtgtcgatcagcgaaggcgcgcggcgtcaggggatggagcagtggctg
ccgctgttctacgaccggctggacaccctgttcgactacctgcccgacgatgcgccggtg
ttcctggacaaccaggtcgaggcggcgcgcgccgagcgctggacgctgatcgacgacgcc
tatgacgcgcgccaagaggccgccaaggccaagcgggcggctggcgcgccggtcggcgcg
aaccgggcgctgccgccggaacggctgtatctgacggccgaggactggaacagcgagctc
gcgggccgcgccgtgcgtcgcctcacgcccttcgatacgcagggcgaggacgccggcggc
cgcctggggcgcagcttcgcggccgaacgggcgcaggacagcgtcaatctgttcgaggcc
gtggcgcgtcatgcggaggcgctgaaggagcagggcaagcgcgtgctgttcgcttcctgg
agcgaaggttcgtcggagcgccttgcggccatgctggccgatcacgggctgacccatgtg
gtggccgtccgcgactgggccgatgttcaggccgcgccgaaggacctgtatctgcgcggc
gtcctgccggtcgagcatggcttcgtcaccgacgacttggcggtgatctcggaaaccgac
atcctgggcgatcgcctggcccggccgcgcaagaagcgtcgggcctccaacttcctggcc
gaggcgtctgcgctgacaaccggcgacctggtggtgcacctggatcacggcatcggacgg
tatgaagggctgcgcaccctggacattcaggacgcgccgcacgattgcctggagctgctc
tacgcgggtgatagcaaactctatctacccgttgaaaacattgacctgctgacccgttat
gggtccgacagcgaaggcgttcagctggatcggctgggcggcgcgggctggcaggcgcgc
aaggccaaggccaaggagcgcctgcgcgccatggccgagggcctgatcgctctggcggcc
aagcgcgcgctgcgcgtgaccgagtccgtcacgccgccgtcgggcctgttcgacgagttc
tgcgcccgcttcccctacgaggagaccgacgaccagctgaacgccatcggcgatgtgctg
gaagatctgggcaggggcacgcccatggaccgcctgatctgcggcgatgtggggttcggc
aagaccgaggtcgcgctgcgcgccgccttcgtcgtggccatgaccggcaaacaggtggcc
atcgtcgcgccgacgacgcttctggcgcgtcagcacttcaagaccttcaccgaacgcttc
gccggctggccggtgaaggtgcgccagctgtcgcgtctggtcaccagcaaggaggccaac
gagacgcgcgcgggcctcaaggacggctcggtcgagatcgtcgtcggcacccacgccgtc
ctggctgagcaggtcgggttcaaggacctgggcctggtgatcgtcgacgaggagcagcac
ttcggcgtcaagcacaaggagaagctgaagacgctgcgcgcggacgttcatctactgact
ttgacggccacgccgatcccgcgcactctgcagatggcgctgtcgggcattcgcgagatg
tcgatcatcgccacgccgccggtcgaccgcctggcggtgcgcacctacgtcacgccgttc
gacccggtgatggtgcgcgaggccttgctgcgcgagaagtatcgcggcggccaggcctat
tacgtcgcgccgcgtctgaaggacctgccggacatcgagaagttcctgcgcgagcaggtt
cccgaggtgaagttcgtcgtcggtcacggccagatgtcggccacccagctggaggaggtg
atgagcgccttctacgacgggcagtacgacgtcctggtctccaccaccatcgtcgaaagc
gggctggacattccaacggccaacaccctggtcgtgcatcgcgccgacatgttcggcctg
gcccagctgtatcagatccgaggccgtgtcggccgctccaaggcccgcgccttcgcctat
ctgaccagcgatccgatcaagcccatgaccttgtcggcggagcggaggctgcaggtgctg
cagtcgctggacaacctcggcgccggcttccagctggccagtcacgacctggatcagcgc
ggcggcggcaatctgctgggcgacgaacagtcgggccacatccgcgaggtcggcgtcgag
ctgtaccagcagatgctggaagacgcggtcgcggacctgaaggccgatggcgagggcgag
gcggtcgaccgcggctggtcgccggcgatcaacgtcggcgccgccgtattgattccagag
gattacgtgctggacctcaacgtccgcctgagcctttatcgccgcctgtcggacgccgag
aacaccgaagatcgggaagcgctggccgcggaactgatcgaccggttcggtccccttcct
gacgaggcgaagcaactgctgcggatcgtgggcataaaggcggcgtgcaagacggcgtgc
atcgagaagatcgacgtggggcccaagggggccgtgctgacgctgcgcgaaaaccgcttc
ccgaatccggcgggcctgatcggcctgatccagaagaaccaagccttctggaagattcgg
ccggatcagaagatcgtggtcaagggcgactggcccacgccggaagatcggctgaaggtc
gccgaacggataatgtcagatttggcgcgggtggcggccgccggctga
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