KEGG   Brevundimonas sp. GW460-12-10-14-LB2: A4249_10585Help
Entry
A4249_10585       CDS       T04395                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brg  Brevundimonas sp. GW460-12-10-14-LB2
Pathway
brg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A4249_10585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brg03400]
    A4249_10585
Enzymes [BR:brg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A4249_10585
DNA repair and recombination proteins [BR:brg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A4249_10585
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANC54058
UniProt: A0A160HYG7
LinkDB All DBs
Position
complement(2124273..2126834)
Genome map
AA seq 853 aa AA seqDB search
MRGELKTYQAKRRFGETPEPKGAKGKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKEWTASKPTGRKGPAKPKPSKAAAKARKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFSDLATHAATWPDAVIDGELCA
LDEEHMPDFGALQAAISDEKTEDLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGK
MAGARLRYVEHFASTGQAVLESACRMDLEGVMSKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVREKGGLRYLGRVGTGYGEAVTKTLVPALKGVAAQKSPFAGA
GAPKAAKDIHWVKPVLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTEPPQPPTDMGD
AKKTTTTVRPAGKPGKVVVAGVTLSSPDKVLWPAVGDRPAITKADLARYYEAAAERILPH
VADRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDAGGLVAIAQSG
GLELHPWGCAPGQPEIPDQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIAFPLSWRQVKAGLDPAAFNLWTYAALLKKPDPWADFRSS
AVSLQSALKKMGV
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgcgaagggcaagcgcgcgaagggcggcttccgctatctgatccagcgccacgcg
gcgacgcgtctgcactatgatttccgtatcgaggcggacggggtgctgaagtcctgggcc
gtgaccaaggcgccgtcgcgcgacacggcggtcaagcggctggcagtcgaggtcgaggat
catccgctggattacggatcgttcgaaggcacgatccccgacggcaactacggagccgga
acggtgcagatgtgggatgtcggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgaacggctgaagggcaaatgggcg
ctgatccggctgaagagtgatcggggcaaaccctccaaacgcaacaactggctgctgctg
aaggagaaggacgacttcgccgtggcgggagagggcgatgcgctggccgaaatcgacgcc
tctgtgacgaccggccggtctctggccgagatcgcggatgggacgaaggagtggacggcg
tccaaaccgacggggcgtaaaggtccggccaagcccaagccctcgaaagcggcggcgaag
gccaggaagccgccggccttcgtgccgatccagctgtgtaaggtgaccgaccatccaccg
ggcgggacgggttgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtg
ggcggcggtcgggcggtcttgcggacgcgcaagggtctggactggagcgacaagttctcg
gatctggcgacgcacgcggcgacctggcccgacgccgtgatcgacggcgagctgtgcgcg
ctggatgaggaacacatgccggacttcggagcgttgcaggcggccatctcggacgagaag
actgaagacctagtgtatttcgccttcgacctgttgttcgagggggcggaggatctgcgc
aaactgccgctgtcgcatcgcaaggcgcggctgcaggcttatgtggaccggatcggcaaa
atggccggggcgcggctgcgttacgtcgagcatttcgcctcgaccggccaggcggtgctg
gagagcgcctgccgcatggatctggaaggcgtgatgtccaagaaactggatgccccctac
catgccgggcggtcatcgacctggctgaagtccaaatgccgcgggcgcgatgaagtcgtg
atcggcggctggtcgtccgagggcggcacgcggttccgctctctgctggtcggggtcagg
gaaaagggcggccttcgctatctgggccgggtggggaccggctatggcgaggcggtgacg
aagacgcttgttccggcgctgaagggcgtggcggcgcagaagtctcccttcgccggggcg
ggcgcgccaaaggcggccaaggacatccattgggtcaagccggtgctggtcgccgaggtc
gagcacggcggctataccgaatccggatcgctgcggcaggcggcgttcaaagggttgcgc
gaagacaagacggccgcagaggtcaccgagccgccgcagccgcccacggacatgggcgac
gcgaagaagaccacgacgacggtgcgaccagccggaaagcccggcaaggtggtcgtggcg
ggcgtgaccctctctagccctgacaaggtgttgtggcccgccgtgggcgaccggccggcg
atcaccaaggccgatctggcgcgctactacgaggcggcggctgagcggatcctgccccat
gtggcggaccggccgacctcgatcatccgggcgcccgagggaatcggcggcgagaccttc
ttccaacgccacgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaggcg
cgcacgccctatgtggccgccgtcgatgcgggcggcctggtcgccatcgcccagtcaggc
gggctggaactgcacccctggggctgtgcgcccggccagccggaaatccctgaccagatc
accttcgacctggatccggacgaggggctggacttcgccgacgtcatcgccgcgtccaag
gtcgtgaaagcgaagattgaggcgctgggtctcgccgccttcgtcaagacgaccgggggc
aaggggctgcacgtcgtggtgccgatcaagaccgacgcccgctcgcgcgtgacctgggac
cagaacaaggctttcgccaaggcggtggccgaggccatccgagccgaggcgccggaccgg
ttcaccacgaccctggccaagaaggcgcggggcggaaaaatcttcatcgactatctgcgc
aacgggcgaatggcgacggcggtcgcgccctggtcgccgcgcgcacggccgggggcgggg
atcgccttcccgctgtcgtggcgtcaggtgaaggccgggctggaccccgccgcattcaac
ctctggacctatgcggccttgctgaagaagcccgatccctgggccgatttccgcagctcg
gcggtcagtttgcaatcggcgcttaaaaagatgggcgtctag

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