KEGG   Bradyrhizobium sp. SK17: CWS35_34490Help
Entry
CWS35_34490       CDS       T05325                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brk  Bradyrhizobium sp. SK17
Pathway
brk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CWS35_34490 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brk03400]
    CWS35_34490 (ligD)
Enzymes [BR:brk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CWS35_34490 (ligD)
DNA repair and recombination proteins [BR:brk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CWS35_34490 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AUD00016
UniProt: A0A2K8YQV5
LinkDB All DBs
Position
complement(7426717..7429344)
Genome map
AA seq 875 aa AA seqDB search
MRNLTTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDFRLEFDGVFKSWAV
TRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVQLWDRGTWDSDDPERGFKK
GDLKFTLHGEKLHGSWVLVRMKSDRFGGKRTNWLLIKHRDEYAVDGDGEAVLGEDRSVAS
GRSMAQIAAGKGRAPKPFMLAKGNGKATADAVWQSNHGMAADARAKTKAPAPKAKLKAQL
KERPRAKPKQVAEMPDFVSPQLCAAVESPPNGAGWGHEIKFDGYRVQLRVEDGEADVKTR
KGLDWSDKFAAIVEEACKLPDALIDGEIVALDENGTPHFSTLQAALSDGKTEQLIFYAFD
LLFAGTEDIRPLPLAERKAQLQALLAARKGKNPLIRYVEHFEESGDAVLESARKLGLEGI
VSKRLDGAYRSGRSDDWTKAKIRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGIVG
TGFGQDTVRRIMPALKEAASDTSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIR
QAAFKGLRQDKPAHEVEAERPVVTRVVKPMAKGKASSEVMGVAISHPDKALWPDAGDGEP
VTKLDLASYFEAVGEWMIGYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKVSG
DRKPYLQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFSDVVDAA
KEMRQRLTAVGLESFCKTTGGKGLHVVAPLQSGARDKVTWKEAKAFAQGICQWMAQDDPE
RYLINMSKAKRTGKIFLDYLRNDRLATAVAVVSPRARPGATVSMPLTWTQVRGDLDPAKY
TVRSVPALLAKTKAWDGYDDAASSIKAAIKKLAAQ
NT seq 2628 nt NT seq  +upstreamnt  +downstreamnt
ctgagaaacctcaccacctatcgcaagaagcgcgacttcgagaagaccagtgagccgtcg
ggcgacgtcaaggtcgcaccgagcaagcagcgccgcttcgtgatccagaagcatgacgcg
acgcggctgcactatgatttcaggctggagttcgatggcgtcttcaaatcctgggcggtg
acgcgcgggccatcgctcgatccgcatgacaagcggctcgcggtcgaggtcgaggatcat
ccgctcgactatggcgatttcgaaggtacgatcccggaagaccagtatggcggcggcacc
gtgcagctgtgggatcgcggcacctgggactctgacgatcccgagcgcggcttcaagaag
ggcgacctgaagttcaccctgcatggcgagaagctgcacggcagctgggtgctggtgcga
atgaagagcgaccgcttcggcggcaagcgcaccaattggctattgatcaagcaccgggat
gaatatgccgtcgatggcgatggcgaagcggttctcggagaggatcgctcggttgcgtcg
ggccgttcgatggcgcagatcgcagccggcaagggccgggcgccgaagccgttcatgctg
gcgaagggcaacggcaaggccacagcggatgcggtctggcagtccaatcacggcatggcc
gcggacgcccgcgcgaagaccaaggcgccggcgccaaaggcaaagctgaaggcgcagttg
aaggagcggccgagggcgaaaccgaagcaggtggcggagatgcccgatttcgtctcgccg
cagctctgcgccgcggtcgagtctccgccgaatggcgccggctggggccacgagatcaag
ttcgacggctatcgcgtgcagcttcgcgtggaggatggcgaggctgacgtgaagacccgc
aagggactcgattggtcggacaagttcgccgcgatcgtggaggaggcctgcaagctgccg
gatgccttaatcgacggcgagatcgtcgcgctcgacgagaacggaacgccgcatttttca
acgttgcaggccgcgctctccgacggcaagaccgagcaactgatcttctacgcgttcgac
ctgctgtttgcaggcaccgaggatatccgcccgctgccgctcgccgagcgcaaggcgcag
ttgcaagcgttgctcgcggcgcgcaagggcaagaaccccttgatccgctatgtcgagcat
ttcgaggagagcggcgatgccgtgctggagtccgcgcgcaagctcgggttggaaggcatc
gtctccaagcggctcgacggggcctatcgctccggccgttccgacgactggaccaaggcc
aaaatccgcgccggccacgaggtggtgctcggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtctatcgcggcgatcatctggcctttgtcggcatcgtcggc
accggctttggccaggataccgtccgccgcatcatgccggcgctgaaggaagctgcctcc
gacacgagcccgttcggcggcaaggatgcgccgaaaaagactcgcgacgtgcactggctg
aagcccgagctcgtcgccgagatcgagttcgcgggctggaccgacgccggcaatatccgc
caggccgccttcaaggggctgcggcaggacaagccggcgcatgaggtcgaggccgagcga
ccggtcgtaaccagagtggtgaagccgatggcgaaaggcaaggcgtcgagcgaggtgatg
ggcgtcgccatctcgcatcccgacaaggcgttgtggcccgatgccggcgacggcgagccg
gtgaccaagctcgacctcgccagctatttcgaggcggtcggcgaatggatgatcggctat
ctcaaggggcggccgtgctcgatcgtgcgcgcgcccgacggcatcaagggcgagacgttc
ttccagcgtcacgcgatggccggcacgtcgaagctgctgaagcttgccaaggtctcgggc
gaccgcaaaccgtatttgcagatcgaccagatcgaggggctggccgcggtcgcgcagctc
ggcggcctcgagctgcatccctggaattgcgcgcccgacgcctatgatacgccgggccgg
ctggtgttcgatctcgatccggcgcccgacgtggcgttctccgacgtcgtcgacgctgcc
aaggagatgcgccagcggctgaccgcggtcggcctcgaaagcttctgcaagaccaccggt
ggcaagggccttcatgtcgtcgcgccgttgcagtcgggggccagggacaaggtgacctgg
aaggaggccaaggccttcgcgcagggcatctgccaatggatggcgcaggatgacccggag
cgctatctgatcaacatgtccaaagccaagcgcaccggaaagatcttcctcgattatctg
cgcaacgaccggctcgcgacggcggtcgcggtggtctcgccgcgggcgcggccgggcgcg
acggtgtcgatgccgctgacctggacacaggtgcgtggcgatctcgatccggcaaagtac
acggtgaggtcggtgccggcgctgcttgcgaagaccaaggcctgggacggctatgacgat
gcggcgtcatcgatcaaggcggcgatcaagaagcttgctgcgcagtga

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