KEGG   Brevundimonas sp. LM2: BZG35_02475Help
Entry
BZG35_02475       CDS       T04750                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brl  Brevundimonas sp. LM2
Pathway
brl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BZG35_02475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brl03400]
    BZG35_02475
Enzymes [BR:brl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BZG35_02475
DNA repair and recombination proteins [BR:brl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BZG35_02475
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AQR60638
UniProt: A0A1S6ERG9
LinkDB All DBs
Position
complement(484241..486835)
Genome map
AA seq 864 aa AA seqDB search
MKGELETYQAKRRFGETPEPEGRKTVGKASAPLRYLIQRHAATRLHYDFRIEVDGVLKSW
AVTKAPSRDTTVKRLAVEVEDHPLDYGDFEGTIPAGNYGGGTVQLWDTGTWSPRHPDTLE
EDWSKGSIKMDLEGERLKGGWALVRLKSDRGKPSKRNNWLLLKEKDEHAVPGEGDALAEI
DASITTGRSMAEIAAGKAAPNAKPSVRKPAAKAKAVARTEPALTAPPAFTPIQLCKVADH
PPSGSGWAHEIKFDGYRVQLATGGGQAKLYTRRGHDWSDKFPEIVADAAKWPDGVVDGEL
CALDADHMPDFSALQSAIPDGKTDDLVLFAFDLLFEGAEDLRGLPLSHRKARLTAHIDRM
PKAARGRIRYVDHFATTGQAVLESACRMDLEGVISKKLDAPYSAGRSTTWLKSKCRGGDE
VVIGGWSSEDGTRFRSLLVGVQDGEGLRYLGRVGTGYSQPLMKTLLPALKTAAADASPFA
GKGAPRGGREIHWLKPVLVAEIEHGGYTEAGSLRHAAYKGLRADKPAAEVTERPQAPSPT
GRAAPATDLHVPGEAAPLKGGSAKGKVVVAGVTLSNPDKILWPAVGDHPAITKAELARYY
EAVAARILPHVADRPTSIIRAPEGVGGETFFQRHAMPGSNPRLKLIDVHERKPYVGVVDV
GGLVAIGQSGGLELHPWGCMPGDPEVPDQITFDLDPDEGLDFDDVIAAAKVVRKKLEALG
LAPFVKTTGGKGLHVVVPIKTDARSRVTWDQNKALAKAVSEAIRVEAPDRFTTTLAKKAR
GGKIFLDYLRNGRMATAVAPWSPRARPGAGIAYPLNWTQVKTGLDPTAFTLRTYAALLKK
PDPWKDFRASAVSLRPALKAMKVG
NT seq 2595 nt NT seq  +upstreamnt  +downstreamnt
atgaagggcgagctggagacctatcaggccaagcgccgcttcggcgagacgcccgagcct
gaaggcaggaagacggtcggcaaggcgtccgcccccctgcgctatctgatccagcgccat
gcggccacgcggctgcactacgacttccgcatcgaggtcgacggcgtgctgaagtcctgg
gccgtgaccaaggccccgtcgcgcgacaccacggtcaaaaggctggcggtggaggtcgag
gaccacccgctggactacggcgatttcgaaggcaccatccccgccggcaactatggcggc
ggcacggtccagctgtgggacaccggcacctggtcgccccggcatcccgatacgctggag
gaagactggtccaagggctcgatcaagatggacctcgagggcgagcggctgaagggcggc
tgggccctggtgcggctgaagtccgatcgcggcaagccgtccaaacgcaacaattggctg
ctgctgaaggagaaggacgaacacgccgtgcccggcgagggcgacgccctggccgagatc
gacgcctccatcaccaccggccgaagtatggccgagatcgccgccggcaaggcggccccg
aacgcgaagccaagcgtgcgcaagccggcggcaaaggccaaggcggtcgccaggaccgag
ccggccctgacggctcccccggccttcacccccatccagttgtgcaaggtggccgaccat
ccgccctccggatccggctgggcccacgagatcaagttcgacggctaccgcgtccagctc
gccaccggcgggggccaggcgaaactctacacccggcgcggccacgactggtccgacaag
tttccggagatcgtcgccgacgccgccaaatggccggacggcgtggtcgacggcgagctg
tgcgccctggacgccgatcacatgcccgacttctcggccctgcagtcggccattcccgac
ggcaagaccgacgacctggtcctgttcgccttcgacctgctgttcgagggtgccgaggac
ctgcgcggcctgcccctgtctcaccgcaaggcccggctgaccgcccatatcgaccgcatg
cccaaggcggcgcgggggcgcatccgctatgtcgaccatttcgccaccaccggccaggcc
gtgctggaaagcgcctgccggatggatctggaaggcgtcatctccaagaagctggacgcg
ccctactccgccggccgctccaccacctggctgaagtccaaatgccggggcggggacgag
gtggtgatcggcggctggtcctccgaggatggtacccggttccgctccctgctggtcggg
gtgcaggacggcgaaggcctgcgctatctcggccgggtcggcaccggctactcccagccc
ctgatgaagaccctgctgccggcgctcaagaccgccgccgccgacgccagccccttcgcc
ggcaagggggctccgcgcggcggccgcgagatccactggctgaagcccgtcctggtcgcc
gagatcgagcacggcggctataccgaggccggatcgctgcgccacgccgcctacaagggc
ctgcgcgccgacaagcccgccgccgaggtcaccgaacgccctcaggcgcccagcccgacg
ggcagggccgcccccgccaccgacctgcacgtccccggcgaggcggcgccgctgaaaggc
ggctcggccaagggcaaggtcgtcgtggccggggtcaccctgtccaaccccgacaagatc
ctgtggccggcggtcggcgaccacccggccatcaccaaggccgagctggcccgctattac
gaggccgtggccgcgcgcatcctgccccacgtcgccgaccgtccgacctcgatcatccgc
gcgcccgaaggcgtcggcggcgagaccttcttccagcgccacgccatgcccggctccaac
ccccggctcaagctgatcgatgtgcatgagcgcaaaccctatgtcggggtcgtcgacgtc
ggcggcctggtcgccatcggccagtcgggcgggctggagctgcacccctggggctgcatg
cccggcgaccccgaagtccccgaccagatcaccttcgacctcgaccccgacgagggtctg
gacttcgacgacgtgatcgccgccgccaaggtggtgcggaaaaagctggaggccctgggt
ctggcccccttcgtcaagaccaccggcggcaagggcctgcacgtcgtggtgccgatcaag
accgacgcccgcagccgcgtcacctgggaccagaacaaggccctcgccaaggccgtgtcc
gaggccatccgcgtcgaggctcccgaccggttcaccaccaccctggccaagaaggcgcgg
ggcgggaagatcttcctcgactatctgcgcaatggccgcatggccacggcggtcgccccc
tggtcgccgcgcgcccggccgggcgccggcatcgcctatccgctgaactggacccaggtg
aagaccggcctggatcccaccgccttcaccctgcgcacctatgccgccctgctgaagaag
cccgatccgtggaaggatttccgcgcctcggccgtcagcctgcggccggcgctgaaggcg
atgaaggtcggctag

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