Brassica rapa (field mustard): 103835435
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Entry
103835435 CDS
T03449
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103835435
09122 Translation
03013 Nucleocytoplasmic transport
103835435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103835435
03041 Spliceosome [BR:
brp03041
]
103835435
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103835435
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103835435
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103835435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
103835435
NCBI-ProteinID:
XP_009109857
LinkDB
All DBs
Position
A08:18223005..18237041
Genome browser
AA seq
1802 aa
AA seq
DB search
MSLPLLECKYVTEEFVREGKSGSYGSKLPSSVPMLRFLYELCWVLVRGELPIQSCKAVLE
KVKFLDDPSKEELASCFADVVTQIAQDLTMSGDHRSRLTKLAKWLVESQTVPQRIFQERC
EEEFLWEAEMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYAKLITLLCRGSAGS
SHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFLNLIPIFPKSHASQILG
FKFQYYQRLEVNSPVPSGLYKLTALLVKKNFISLESIYAHLLPKDEEVFEDYNTYSAKRF
EEANNIGKINLAATGKDLMEDEKQGDFKVDLYAALDMETEAVAERIPELENNQTLGLLDG
FLSVDDWKHANIMFERLAPLNPVAHNHICDGLFRLIEKRITHAYRIARQTRFQNSSSAGS
EKIAHAANTSASKTCPDLKEVFQILVTVGPYLYRNTQLLQKICRLLRVYYLSALDLVRSS
DGSSNQEGSADEIKHLKEARFRVEEALGTCLLPSLQLIPANPAVGHEIWEVMSLLPYEAR
YRLYGEWEKDDERNPLLLAARQVAKLDTRWILKRLAKENLKPLGRMVAKLAHANPMTVLR
TIVTQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQGGRAKLKDDGINLSDWLQS
LASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLTEDQL
DAMAGSETLRYHATSFGMTRNNKALVKSSNRLRDSLLPNDEPKLAIPLLLLIAQHRSLVV
VNADAPYIKMVTEQFDRCHGILLQYVDFLSSAVTPATAYAQLVPSLEELVHTYHLEPEVA
FLVFRPVMRLFKCRRNGDVSWPLDSGESIDADSDVSKSESSMILDVGTSEKAVTWSDVLD
TVRTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEISKQHAALKTLEEVADNSSS
AITKRKKEKERIQESLDRLTGELKKHEEHVASVRRRLSREKDKWLSSCPDTLKINMEFLQ
RCIFPRCTFSMADSVYCAMFVHMLHSLGTPYFNTVNHIDVLICKTLQPMICCCTEYEVGR
LGRFLFETLKIAYHWKSAESIYESECGNMPGFAVYYRYPNSQRVTFGQFVKVHWKWCAKI
TKLLIQCLESNEYMEIRNALIMLTKISGVFPVTRKTGYNIEKRVAKIKNDEREDLKVLAT
GVAAALSARKSSWVTDEEFGMGYLELKAPPVHTPKHTPSQNGLVGGESTGGRSTANQQSE
SGGKDQLSKTKIPDGRTENMPSKSDQGHPKSKEGNPSDAKPSMSKKPVDQKETDESPRIS
DENPVKAGSKYSEAELKPSSKRGASATSTNKSIKQDFGKDDGKSGKAAGRTSAADNDVIY
LGSRQASLTKASPSTAGNGSLATGSSKVKDDGAEATDTQKQSTRTAHSPRHEISTSSRSS
DRLQKRANAVEDSDRTSKRRKADSEHKEHDSEARPGDRDRSAEARVDLNKTPSDDQSTQR
DQDRAKDKGNERQDRDHRERVERSDKTRADDAVKARDKSMERYGRERSVERGLDKGTTRS
YDRNKDERSKDDRSKLRHSEASLEKAHGDDRSLSQGLPPPPPLPPNIVPHSMASKEEPER
RAGVTRHSQRLSPRHDERERRRSEENTSVSVEESKRRRDDDFRDRKRDDRETIILKGEER
EREREREREKSIPLKDDFEASKRRKIKRDQQVSSAEPGEYSPMPHQSSLSMGMGPSSYEG
REQRKSSSSMIQHGGYPEEPSIRLLGKEASSKMARRDPDPMYDREWEEDKRQRAERKRRD
RK
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccgctacttgagtgtaagtacgtgacggaggagttcgttcgcgaagggaag
agtggcagctacggttccaagctgcccagctcggtaccgatgcttcgtttcctctacgag
ctttgttgggttttggttcgtggcgagttgccgattcagagctgtaaggctgtgttggag
aaggtgaagtttttggatgatccgtcgaaggaagagttagcttcttgttttgcggatgtt
gtgactcagatagctcaagatcttactatgtcgggggatcaccgttctcgcctaacaaaa
ttggcaaaatggcttgtggaatcacagacagttcctcaaaggattttccaagagcgttgt
gaggaggagtttttatgggaagctgaaatggttaaaataaaagcccaagatttgaagggg
aaagaggtgcgattaaacactcgtcttctgtaccagcagacaaagttcaacttactccgt
gaagaaagcgagggatatgccaaattgattacccttttatgccgaggatctgcaggttct
tcgcataatgcatcagcagcaaccatgggaattatcaagtcattaattgggcattttgac
cttgatccgaaccgtgttttcgacattgtgttggattgctttgaacttgaacaagattac
gacacgtttctcaatctaattcctatttttcccaagtctcatgcttcacaaattcttgga
tttaaatttcaatactatcagagattggaggtgaatagcccagttccatctgggctctat
aagcttacggccttgctagtaaagaagaatttcatcagtcttgaaagcatatatgcacat
ctgctacctaaggacgaagaagtttttgaggattataatacttattctgcaaagcgtttt
gaagaggccaataatattggaaagataaatcttgctgctactgggaaggatcttatggag
gatgagaagcaaggagatttcaaagttgatctctatgctgctttagacatggaaactgaa
gctgttgctgagcgaataccagagcttgaaaataatcagactctgggcctccttgatggt
ttcctctctgtggacgactggaaacatgccaatatcatgttcgagcgtcttgcgcctctt
aatccggtggctcacaatcatatatgtgatggcttgtttaggcttatagagaagagaatc
actcatgcttatcgcattgcccgtcagacacgttttcaaaattcttcttctgcgggttca
gaaaagattgcccacgctgctaatacaagtgccagtaaaacttgtccagatcttaaagaa
gtgtttcagatacttgttacagttggaccctacttgtaccgtaatacacaactgctgcag
aagatttgtagactattaagggtttactacttgtcggccttagatcttgttcgcagtagt
gatgggtcatcaaatcaagaaggtagtgcagatgaaatcaagcacctgaaggaagctagg
tttagagtggaagaagcccttggaacatgccttctgccatcgttacagttaatacctgca
aatccagcagttggtcatgagatttgggaagtgatgagtctccttccatatgaggctcgt
tatcgcttgtatggtgagtgggaaaaggacgatgagcggaatcctttgctgttggcagca
aggcaagtggctaagttggacactagatggattctgaaacggcttgcaaaagaaaatttg
aagccgttaggaaggatggtggcaaaactagcgcatgccaatcccatgacggtgcttcgg
acaattgtgactcagattgaagcatacagagatatgattgctcctgttgtagacgccttc
aagtacttgacacagctcgagtatgatatcctggaatatgtcgtgattgagagactggtg
caaggcggacgagctaaactcaaagatgacgggattaatttatcagactggcttcaatct
ttggcttcattttggggtcacctgtgtaagaagtatccatcaatggagttaaggggtctt
ttccagtatctcgttaaccagttaaagagaggccaagggattgagcttgttcttctccag
gaactgatccagcagatggcaaatgtacaatacactgagaatcttactgaagatcagttg
gatgccatggcaggaagtgagacattacgttatcacgcaacatcctttggcatgacacgg
aacaacaaggcacttgtcaaatcatccaaccgtctacgagattcgttacttccaaatgat
gaaccaaagctagctatcccccttttgttacttatcgcccagcatcgttctctggttgtg
gtaaatgcggatgcaccctacattaagatggtcactgaacagttcgacagatgtcatgga
attctcctccaatacgtggactttctttctagcgctgttactcctgctactgcttatgct
cagctcgtaccttcgcttgaagagcttgttcatacataccatcttgagccagaggtcgct
tttttggtatttcgacctgtgatgaggctcttcaaatgtcgacggaatggtgatgtttca
tggcctttggacagtggggaatctattgatgcagattccgatgtatcaaaatctgagagt
tccatgattcttgatgtcggcacatctgaaaaagctgtaacgtggtctgatgttcttgat
acagtaagaacaatgctgccttcgaaagcttggaatagtctgtcgccagacctctacgct
acattttgggggcttactctgtatgatctccatgttcccagaagtcgttatgagtctgag
atatctaaacaacatgctgcccttaagactcttgaagaggttgctgataattctagctca
gcaattacgaagagaaaaaaagagaaggaaaggattcaagaatctcttgatcgtctaacc
ggtgaactgaaaaagcacgaagaacatgttgcctctgtccgtagaaggctttcacgtgaa
aaggataaatggttgagctcctgtcctgatactttgaagatcaatatggagttcctgcaa
cgttgtattttccctcgttgcacatttagcatggcagattctgtgtactgtgctatgttt
gtacatatgctccactctcttggaacaccctattttaacacagtcaaccacattgatgta
ctgatatgtaaaacgctacaaccgatgatctgctgctgcactgaatacgaagtgggaaga
cttgggaggtttttattcgagaccttgaagattgcataccactggaagagcgcagaatca
atctatgaaagtgagtgcggaaacatgcctgggtttgctgtttattatagatacccgaac
agccagcgtgtcacatttggacaatttgtgaaggtacattggaaatggtgtgcaaaaatc
acaaagcttttgatccaatgtctggagtcaaatgagtacatggagattcgtaatgcgcta
ataatgctaacaaaaatatctggtgttttcccagttactcggaaaactggatataatatc
gagaaacgggtagcgaaaattaaaaatgatgagcgagaggaccttaaggtcttggcaact
ggtgttgccgctgctctatctgcaagaaaatcatcatgggttactgacgaagaatttggc
atgggttaccttgaactaaaggctccgccagtacatactcctaaacatactccttcccag
aatggcttggtaggtggtgaatcaactgggggaagatctactgctaaccagcagtctgag
tctggcggcaaggaccagttgtcaaaaactaaaataccagatggaagaacggaaaatatg
ccttcaaaatctgatcaaggacatccaaaatcaaaggaaggcaatccatcggatgccaaa
ccatctatgtctaagaaaccagtggaccaaaaggaaacagatgaatcacccagaatatct
gatgagaatcctgtcaaagctggttcaaagtactctgaagccgagttaaaaccttcttct
aaacgaggtgcatcggctacgtcgacgaacaaatcaataaagcaagattttggaaaagat
gatggaaagtccggtaaagctgctggaagaacatccgcagctgataacgatgttatttat
ctggggagcaggcaagcaagtttgaccaaagcttctcccagcacagcaggcaatggtagc
ttagctactggttcgtccaaagtgaaagatgatggtgctgaagctacagatactcaaaag
caatctactcggactgctcattcccctaggcatgaaattagcacttcttcgaggtcgagt
gataggttacagaaacgagcgaatgctgttgaagatagtgacagaacaagtaaacgccgt
aaagcagactctgagcacaaagagcatgacagtgaggctcgcccgggtgatagagacaga
tcagcagaggctagggtggatttaaacaaaacacccagtgatgaccaaagcacccagaga
gatcaagacagggcaaaggataagggtaatgaaagacaggaccgagaccacagagaaaga
gtcgagcgttctgataaaactcgtgcagatgatgcggtaaaagcacgagacaaatccatg
gaacgttatggcagagagcggtcagttgagaggggccttgataaaggaacaactaggagt
tacgatagaaacaaggatgaaagaagcaaagatgacagaagcaaattgcgtcatagcgag
gcgtcacttgagaaagctcatggtgatgatcgctctctttctcaaggcttacccccacct
ccacctttacctcctaacatcgttcctcattctatggcctcgaaagaagaacccgaaagg
agggccggagttacaaggcattcccagaggctttctccgaggcatgatgaaagagagaga
cgacgctctgaagagaatacatcagtttctgttgaagaatcaaaacgaagaagagatgac
gattttcgtgaccgtaagcgagatgacagagaaacaatcattctgaagggagaagaaagg
gaaagagagagggaaagagaaagagaaaaaagtatcccattgaaagatgattttgaagcg
tccaagagaaggaagataaagagggatcaacaagtctcatctgcagagccaggggaatac
tctccaatgccacatcagtcatctttgtcaatgggtatgggaccatcatcgtacgaaggc
agagagcagcgaaagagcagtagtagtatgattcaacatggaggttatcctgaagagcca
agcatcagacttcttggcaaagaagcttccagcaagatggctcgtcgtgatcctgaccca
atgtatgatcgtgagtgggaagaagacaagaggcaaagggcagaacggaagcggagagat
cggaagtag
DBGET
integrated database retrieval system
