Brassica rapa (field mustard): 103847160
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Entry
103847160 CDS
T03449
Name
(RefSeq) uncharacterized protein LOC103847160
KO
K19026
spatacsin
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103847160
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
103847160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
103847160
NCBI-ProteinID:
XP_009122821
LinkDB
All DBs
Position
A01:210086..228598
Genome browser
AA seq
3133 aa
AA seq
DB search
MEKLLKEGPTLLQLHKWEPSQLQLNLSEFREAFISPSRQSLLLLSHHSEALLLPLSAGSS
IGSEVPVDCHNDESSCPTTVSVGSDPVNTAPPSGSGVGSGDPGFVDNCTSFPFIFDAKSV
AWGSCGDTYDRHEDPLFRELLFISGSHGVTVHAFCCFKDSSDVANGKPNGELRHGEWVEW
GPSRLNQDPEPEHGTASSFDGSKQWMQSFLVDVETTEIEGIRQSRFPEKSAFPGSANVVS
FSILNGDLPFSNLQEGNMPEEGMYRCTKVFSSDSHVLIGFVMELSGCASTPTSNANGKSK
GKSVVFVAQLFNWGMEWVSLVNIGETSIRPTNEWADFRMTDKFVICLSVSGLIFLYDVKS
GDCFAHHDILQTCGPGLHSSSNVQEVTAESDDRNDFQSLAPSMFKSHVVGSAGRRKFRKL
ILASHTPLVAAVDENGLVYVLCVDDFVSEEYHMPLESIPSLCHLGPGSLVGWKVGGMDIG
QQKVHHAGEDVFTRCDPRSFASDTPMSDPCLKRQQNNFDRRAGYCGSWLSGFTVQPKTNA
RGLENFQRDSQVMRKMFLSAEKLGSEDNLCFSPLGFTHFSRKHTKKEDQSCKVLHYSLQT
HMTTRDDSYLNYDNRISVQGAEETFVGESVGCSFQGFLYLVTCSGLSVFLPSISVTSNYP
TVEAVEYLQPLQTTVMGCQGRDNLRTDESRIPLQVEVLDRVILFEGPEAADRLCLENGWD
LKIARLQRLKMALDYLKYDDINESLKTLGNMKLAEEGMLRVLFSALYLLSRKSRNDTEIS
AVSRLLALATRFATEMIRIYGSLEYQKDGHMLDRRSRTRLLSLPPISRHHDVMENSRRLS
EMGYLLEITRNFQSRISRKFKKLGKGKNEKSLNLVDPSSLQDDSQLDVVPDAAHAESRQL
DDTNEELALTPLGMMTAKAGQVIDEISYASSLVPQGVVPETKVLPLENPKEMMARWKTDN
LDLKTVVKDALLSGRLPLAVLQLHLQHSKDSSENGEHHDTFTEVRDVGRAIAYDLFLKGE
PGVAIATLQRLGEDVEACLNQLVFGTVRRSLRYQIAEEMRKHGFLRPYEDNVLERISLIE
RLYPSSQFWETYLTRRKELLKADVPFDSSKISLHLGGSSLFQHLEIECGEVDGVVLGSWT
KINESASEHAPDETDAIAGYWAAAAVWSNAWDQRTFDHIVLDQPLVMGVHVPWDSQLEYY
MCHNDWDEVLKLLDLIPEDLLYDGNLQIALDVPKQSSGQNYSVSSHSEYIGSIEEVDAVL
MDVPYIKIFRLPADIRCSLWLTTLMEQELAKKLIFLKEYWENALDVVYLLARAGVILRNC
EVSFKEESCRPSLDLSLSRKERGADVDTLNAVHKLFIHYCTQYNLPNLLDLYLDHHELVL
DNDSLSSLQEAVGDSHWAKWLLLSRIKGREYDASFSNARSIMSPGAAPNGEVSIPDIDEI
VCTVDDIAEGAGEMAALATMMCSLVPIQKSLNTGSVNRHSNSSAQCTLENLKPFLQRFPT
LWSKLVTACFGEDISGNLLRTKARNVLSEYLNWRDSVFFSAARDTSLLQMLPCWFPKGVR
RLVQLYIQGPLGWLSFSGYPTGEYLLHRGVEFFINVDDPTEISAISWEAIIQKHIEEELH
NTKTEGTELGLEHFLHRGRPLAAFNAFLEHRVEKIKLEDQSGSLIHGQRNMQSDVPMLLA
PLTQNDESLLSSVIPLAITHFGDSVLVASCVFLLELCGLSASMLRIDVASLRRISSFYES
NDNIAQQKSFKGSMFHAVSSEGDLMGSLARALANEYGYPDISSVSTKKHTPSSFSGAQPC
LPLMLVLHHLEQASLPDIGVDRKTSGYWLLTGDGDGSELRSQQTSASLHWSLVTLFCQMH
NIPLSTKYLAVLARDNDWVGFLSEAQLGGYPFDTVLSVASKEFGDQRLKAHILTVLRHAN
SKKKATISSSDDTSGGFTCSFSEDGAYVSAELFRVLAYSEKLNKPGDYLLSKAKELSWSI
LALIASCFPDVSPISCLTIWLEITAARETSSIKVNDITTKIAENIAAAVVSTNSLPTDAR
GVQFHYNRRNPKRRRLIAHTSVDSLASANSLSTSAGKTLYSHKTEAAEDEIAEDTSVTND
SSDEHASLSKMVAMLCEQRLFLPLLKAFELFLPSCSLLPFVRALQAFSQMRLSEASAHLG
SFGARVKDESMHFQSNTAKEVNFGASWISKTAVKAADAVLSTCPSPYEKRCLLQLLAAID
FGDGGSAATYYRRLYWKVNLAEPSLRWENGLDLGSEALDDGSLLAALEKNRQWEQARNWA
KQLETMGATWTSSVHHVTETQAESMVAEWKEFLWDVPEERIALWGHCQTLFVRYSFPALQ
AGLFFLRHAEAVEKDLPAREIYELLLLSLQWLSGLTTLSHPVYPLHLLREIETRVWLLAV
EAEANVKNLGAFSPSSTRRDIANGNSSNLIDRTASIITKMDNHISSATKNKIGEKQDSRP
PGQAHQRNQDTTTSVFGASTKSKRRAKGNVPQRRHFVDSSDRNIDSEDSPSLLNIKSEFQ
LQEESTGLEICLSKWEESIEPAELERAVLSLLEFGQVTAAKQLQLKLAPESLPSELIILD
TVMKLAMFSTPCSQVPLSMLDDEVRSIIQSQNLKIDQPVIDPLQVLENLSNILNEGSGRG
LARKIIAVIKAANILGLTFTEAYQKQTIELLRLLSLKAQDSFEEACLLVKTHSMPAASIA
QILAESFLKGLLAAHRGGYIDSQKEEGPAPLLWRFSDFLKWAELCPSEQEIGHSLMRLVI
TGQEIPHACEVELLILSHHFYKSSTCLDGVDVLVALAATRVEAYVAEGDFSCLGRLITGV
GNFHALNFILNILIENGQLDLLLQKFSSAADANTGTAQAVRSFRMAVLTSLNLFNPNDHD
AFAMVYKHFDMKHETAALLEARADQAAQQWFRRYDKDENEDLLDSMRYYIEAAEVHTSID
AGNKARKACGQASLVSLQIRMPDSKWLCLSETNARRALVDQSRFQEALIVAEAYGLNQPS
EWALVLWNLMLKPELAEEFVAEFVAVLPLQASMLLELARFYRAEMAARGDQSQFSVWLTG
GGLPAEWAKYMWRSFRCLLKRTRDLRLRLQLATTATGFSDMVDACMNALDKVPDNAGPLV
LKKGHGGGYLPLM
NT seq
9402 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttgttgaaggaaggcccaacactgctgcagctgcacaagtgggagccttct
caattgcaactcaatctatcagagtttcgggaggcttttatttctccgtcgaggcagtct
ttgttattgctctcccaccactccgaagctttgctgttacctctgtctgcagggagttca
attggcagcgaggttcctgtagattgtcataatgacgagtccagttgtcctactacagta
tctgtcgggtcagatccagtgaacactgcacctccttctggatcaggagttggttctggt
gacccaggttttgtagataattgcactagttttccttttatctttgatgcaaagtccgtt
gcttggggtagttgtggggatacttacgaccggcacgaagatccgttgttcagggaattg
ttgtttatatctggaagtcatggtgttaccgtccatgctttttgctgtttcaaagattca
agtgacgtagccaatgggaaaccaaatggtgagctgaggcatggagagtgggttgaatgg
ggaccttctaggcttaatcaggatccggaaccggaacacggaacagcctcttcttttgat
ggttcaaagcagtggatgcaatcttttctagttgatgtggaaactactgagattgagggt
ataagacaatcaaggttccctgaaaaatcagcgtttcctggttctgcgaatgtcgtttca
ttcagcatattaaatggtgatctacctttctcgaatcttcaggagggtaatatgccggag
gaaggtatgtacaggtgcaccaaagttttctccagcgattctcatgttctgattggattt
gttatggagttatcgggctgtgcatctacgcctacaagcaatgcaaacggaaaaagcaag
ggtaagagtgttgtatttgtggctcagctgtttaactgggggatggaatgggtctccctt
gtgaatattggggaaacaagtatcagacctacaaatgaatgggcagatttccgaatgact
gataagtttgttatctgcctcagtgtttctggtttgatctttctatacgatgtgaaatct
ggggattgttttgctcatcacgatattttacagacatgtggtcctggattgcattcttca
tcaaatgtgcaagaagtaacggcagagtctgatgaccgaaatgactttcaaagtcttgct
ccatcaatgtttaagtctcacgttgttggttcagccggcagaagaaagtttaggaaacta
attctagcttctcatacgccactcgtagctgcagttgacgaaaatggtttagtatacgtg
ttatgtgttgatgactttgtttccgaagaatatcacatgcccttggaatctataccttct
ttatgtcatctggggcctggaagtctggttgggtggaaagtcggtggcatggacattggc
cagcaaaaagtgcaccacgctggtgaagacgtttttaccaggtgtgatcctaggtctttt
gcttctgatacccctatgtctgacccatgtttgaaaagacaacaaaacaattttgatcga
agagctggttactgtggttcatggctgagtggttttactgttcagcctaaaacaaatgcg
cggggacttgaaaatttccaaagagactcacaggtcatgcggaagatgtttctatctgcc
gaaaaattaggatcggaagataacttatgtttttctccattgggattcactcatttctct
agaaaacacacaaaaaaggaagatcaaagctgtaaggttcttcattacagcctgcagacg
catatgactacgagagatgatagttatttgaattacgataacagaatttctgttcaaggt
gcagaagaaactttcgtaggagaatcagttggttgttctttccaagggtttctttatttg
gtgacttgtagtggcctctctgtttttctcccttccatctcagttacctcaaattatcct
actgttgaggcagttgaatatctgcagccactccaaaccactgtcatgggatgccaggga
agagacaatttgagaacagatgaatcacgtattcctttgcaagttgaggtcctagataga
gttatattgtttgaaggccctgaagctgcagatcgtttgtgcttggaaaatggttgggac
cttaaaattgctcgtttgcagcgactgaaaatggcgttggactacttaaaatatgatgac
atcaacgagtctttgaagacgcttggtaatatgaagctggcagaagaaggcatgctaagg
gtgctcttttctgctctgtatctgttgtcgcgcaagagtagaaatgatactgagatttct
gctgtatctaggctcctcgcattggctacaaggtttgcaactgagatgattcgcatatat
gggtcacttgaatatcagaaagatggacacatgctggacagaagatctaggacacgacta
ctttcacttccaccaatttcacggcatcacgatgtaatggaaaattcaaggaggttgtca
gagatgggttatcttttggagatcactaggaattttcagtcccgtatttccagaaaattt
aagaagctaggaaagggaaagaatgaaaagtcactgaacctggtagacccaagttctttg
caggatgattctcagcttgacgttgttccagatgcagcacatgcggagtcgagacaactt
gacgataccaatgaggagcttgctttgacgcctctgggtatgatgacagctaaagctggt
caggtcattgacgaaataagttatgcatcttcccttgtacctcaaggggtagttccagag
acgaaagttcttcctctggaaaatccgaaggagatgatggctcgttggaagactgataat
ttggatttgaaaaccgtggttaaggatgccttgctctccggtcgactccctttagctgtt
cttcaattgcatcttcaacattctaaagactcgtctgaaaatggagagcatcatgataca
tttactgaagttcgtgatgtcggaagagctattgcttatgacctatttttgaagggtgaa
cctggggttgccattgcaactttgcaaaggctcggagaggatgtagaagcgtgtctcaac
cagttggtatttggcacagtgaggagatctcttcgttatcaaattgccgaagaaatgaga
aaacatggtttcttaagaccatatgaagacaatgtactggagaggatctctcttatcgag
aggctttatcctagcagtcagttttgggaaacatatcttactcgtcgaaaggaactcctg
aaagctgatgtaccttttgattccagtaaaattagtttgcaccttggggggtcttctctg
ttccagcatctcgagattgaatgtggtgaggttgatggtgttgttcttggttcctggaca
aaaatcaatgagagtgcatctgagcacgcgcctgatgaaaccgatgcaattgctggttac
tgggcagcagcagctgtgtggtcaaatgcttgggatcagagaacatttgatcatatagtt
ttggatcagcctttggtcatgggtgtccatgttccttgggattcccagctagagtattat
atgtgtcacaatgattgggatgaagtccttaagttgttggatctcattcctgaggatctt
ttatatgatggaaatttgcaaattgctttggatgttccgaagcagtcttctggccaaaat
tattcagtttcttcccatagcgagtatataggctccatcgaagaagtggatgctgtactt
atggatgttccttatatcaagatatttaggttacctgcagatatccggtgctccttgtgg
ctaacaacacttatggagcaggaacttgcaaaaaaacttatattcttaaaagaatactgg
gagaacgctctagatgtagtatatcttctggctcgggcaggtgtcatccttcgtaattgt
gaagtttcatttaaggaggagtcttgtaggccatccctagatctttctttgtccagaaag
gagagaggagcagatgttgataccctgaacgctgtacacaagctattcatacattattgc
acgcaatataatctgccaaaccttctggatctgtaccttgatcatcacgaattggtccta
gataatgattcacttagttcattgcaggaagctgttggtgattcccactgggcaaaatgg
ttgctgctgtccaggatcaaggggcgggaatacgatgcatcattttcaaatgcacgctca
attatgtcacctggtgcagcaccaaatggtgaagttagtattcctgatattgatgaaatt
gtttgtactgttgatgacattgctgaaggggcaggagaaatggcagctttagcaactatg
atgtgttcattggtgccaattcaaaaatccttgaatactggtagtgtgaacaggcacagt
aactcttctgcacagtgcacactggagaatttgaaaccatttcttcagagattccctacc
ttatggagtaagcttgttactgcttgttttggagaagatatttctggcaaccttctgcgg
accaaggctaggaatgtcttgtcagagtatctgaattggcgtgacagtgtattcttctca
gctgcacgtgatacctcactcctgcagatgttgccttgttggtttcctaaaggggttcgt
agattagttcagctttatatccagggacctcttggatggctttctttctcaggatatcct
acaggggaatatctactgcacagaggtgttgagttctttataaatgtggacgatccgact
gagataagtgctatatcttgggaagcaatcatccagaagcacatcgaagaggaacttcac
aacacaaaaactgagggaaccgagcttggacttgagcacttcctgcatcgtggacggcca
cttgcagcttttaatgcattcctggaacatagagttgaaaagataaaactggaggatcaa
tctggctctttgatacatggacaaagaaatatgcagtcagatgttccgatgctacttgca
cctctgacccagaatgatgagtcacttctttcatctgtcataccacttgctatcacacac
tttggggattctgtgttggtggcttcgtgtgtcttccttcttgaactttgtggcttatct
gccagcatgcttcggatagacgtggcatcgttgagaaggatatcatccttttacgaatca
aatgacaatatagcacaacaaaaatcattcaagggttctatgtttcatgcggtatctagt
gaaggtgatctaatggggtcactagctagggccctggctaacgaatatggttatcctgat
atttcaagtgtctctacgaaaaaacatactccaagcagtttttctggtgctcagccctgt
cttccgctaatgcttgttcttcatcacctggaacaagctagtcttccagatattggagta
gatagaaagacaagtggatactggctgttaacaggtgatggtgatgggtctgaactgcgg
tctcagcagacatctgctagcttgcattggagtttagttactcttttctgtcagatgcat
aacattcctctgagcaccaaataccttgccgtgctagcaagagacaatgattgggttgga
ttcttatctgaagcgcagcttggaggatacccatttgatacggttctcagtgtggcatca
aaggagtttggtgatcaaagattaaaagctcacatactgaccgttttaagacatgccaac
tcaaaaaagaaggctacgatatcgtcctcagatgacacaagtggaggttttacatgttcc
ttttcagaggatggagcttacgtctctgctgaactttttcgcgttttggcttactctgag
aagctaaacaaacccggagactaccttttatcgaaagctaaggagttatcgtggtctatt
ttggctctcatagcatcatgctttccggatgtttctcctatatcatgcctaacaatctgg
ttggaaattaccgcagccagggaaacgtcatctatcaaggtgaacgatataaccactaaa
atagcagaaaatatagcagcagccgtggtatctacaaattccttgccaacggatgctaga
ggtgtccagtttcattacaataggaggaatcctaaacggagacggcttattgcacatact
tctgtggattcattggcttcagctaatagtttaagcacctcagctggtaaaacactttac
tctcacaaaacagaagctgcagaagatgaaatagctgaagataccagtgttactaatgat
tcgtctgatgagcatgcgtctctatcaaaaatggttgcaatgctttgtgaacaacgcttg
tttcttcctctgctaaaggcttttgaattgttcctcccttcctgctctctactgccattt
gtccgggctcttcaggcattttctcaaatgcgcctttctgaagcttcagcacatttgggt
tcttttggggctagagttaaagacgaatcaatgcattttcagtcaaatacagccaaagaa
gtcaattttggggcatcttggatcagtaaaacagctgttaaagctgctgatgctgttttg
tcaacttgtccatctccatatgagaaacgatgcttattacaacttcttgctgcaatagat
tttggtgatgggggatctgcggcaacatattatcggcgtctttattggaaagttaatttg
gctgagccatcactccggtgggagaacggtcttgacttgggaagtgaggctcttgatgat
gggtctctactggcagctttggaaaagaacaggcaatgggagcaagcacgaaactgggcc
aagcaacttgaaaccatgggtgccacttggacatcctctgttcaccatgttactgaaacg
caggcagaatccatggtcgcagaatggaaagaattcctttgggatgtcccagaagagaga
atcgcattatggggtcactgccaaactctgtttgttagatactctttccctgctttacag
gcaggtttatttttccttaggcatgcagaagcggtggagaaagatctccctgcaagagag
atctatgagctgttactgctatcccttcagtggttgagtgggctaacaaccctttcgcat
ccggtttatcctttgcatcttctgagagaaatcgagactagagtgtggttattggctgta
gaagcagaagcaaatgtgaaaaatttaggagcatttagtccgagtagtaccagaagagac
attgcgaatggaaatagttcaaatcttatagaccgaactgcaagtatcataacaaaaatg
gacaaccatatttcttccgcaacaaaaaataaaattggagaaaagcaggactccaggccc
cctggccaagcacatcaaaggaaccaggacacgaccacttcagtatttggtgccagcaca
aagtctaaaaggagagccaaagggaatgtcccacaaagaagacattttgtggattcttct
gataggaatattgattctgaagattctccatctcttctaaacatcaaaagcgagttccag
ctccaagaggaaagcacgggtttggagatatgcttatcaaagtgggaagaaagtatagag
cctgcggagttggaaagagctgttctgtctttactggagtttggacaagtaacagctgct
aagcagctccaacttaagcttgctccagagagtttaccttctgagctgataattctggat
actgttatgaagctagcaatgttttctacgccttgcagtcaagtaccgttgtcaatgttg
gatgatgaagttcgttctatcattcaatcacagaatcttaaaatagaccaacctgtgatt
gatccgctacaggtgctggagaatctatcgaacattttaaatgaaggcagtggacgtggg
ctggcaagaaaaatcattgcagttataaaagctgctaacatactgggccttacatttacc
gaggcatatcaaaagcagaccatagagttgttacgattactttctcttaaagcacaagat
tccttcgaggaagcatgtctccttgtcaaaacacattccatgcccgctgctagtatcgct
caaatacttgcagaatcctttctgaagggtttactggcggctcatcgtggaggatatata
gattctcaaaaggaggaagggcctgctccacttttgtggagattttcagactttttgaag
tgggcggagctttgtccatctgaacaggaaattggtcattcattaatgcgtcttgtgatt
accgggcaggaaataccacacgcgtgtgaggttgagctacttattttatctcatcacttc
tacaagtcatctacgtgccttgatggagttgatgttcttgtggcacttgctgcgactagg
gttgaggcttatgttgctgagggagatttctcatgcctgggtcgtctaataactggagtt
ggaaactttcatgctcttaatttcattctcaatatcctaatcgaaaacgggcagctcgat
ctcttgctacaaaaattttctagtgctgctgatgcaaacactggtactgcccaggctgtc
agaagttttcggatggccgttctgacttcgttgaatctcttcaacccaaatgatcatgat
gcattcgcaatggtatataaacactttgacatgaagcatgaaacggctgctttgctagag
gcacgtgcagatcaggctgcgcagcaatggtttagacggtatgacaaggatgaaaatgaa
gatctccttgattctatgcgctattacattgaagcagctgaagttcacacttctattgat
gctggaaacaaagcacggaaggcttgtggtcaggcttcccttgtctcgcttcaaataagg
atgccagattccaagtggctctgtttatccgaaacaaacgctagaagagcacttgttgac
caatctcgtttccaggaggctctgatcgtagcagaagcgtatggtcttaaccagccaagc
gaatgggcgcttgtgctttggaatctgatgctcaaacccgaactagcggaagagtttgtg
gctgagtttgtagcggtgcttcccctgcaggcttcaatgctactggaactggctagattt
tacagggccgaaatggcagctcgaggtgaccagtctcagttctcagtctggctgacagga
ggagggttgccagctgagtgggccaaatacatgtggagatcattcaggtgtttgctgaag
agaactcgggacttgaggttacggttacagctggcgacaacagcgactggattctctgac
atggtcgatgcgtgtatgaacgcgttggataaggtcccggacaacgctggaccacttgta
ctgaagaaagggcatggaggaggatacttaccactcatgtga
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integrated database retrieval system
