Brassica rapa (field mustard): 103875292
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Entry
103875292 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
3.6.4.13
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103875292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103875292
Enzymes [BR:
brp01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
103875292
Spliceosome [BR:
brp03041
]
Complex C
Other components
Step II factors
103875292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
ABC_tran
TsaE
Sigma54_activ_2
PhoH
SLFN-g3_helicase
AAA_16
T2SSE
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
103875292
NCBI-ProteinID:
XP_009152046
UniProt:
A0A3P5YLK7
LinkDB
All DBs
Position
A06:25424080..25428558
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AA seq
1171 aa
AA seq
DB search
MEKKELNKLNHLSLVSNICNELETHLGQAPKDLAEYIIHLGRNSETADELDKKLKKDGAE
LPDYFVRSLLTVIHGIYPPQPKSDDVEEDGGEKERFKGLAIRDTKDKVKELEKEIEREAQ
ERQREEDRNRRGSGRDRDRDDRRDRYGDGDDRRSDRHRGRYDEGDRHRGRDRGDDRGGRH
RGRSRGDDEGGEGRSDRRRDRGVQDEYTGANEPELYQVYKGRVTRVMDSGCFVQFDRFRG
KEGLVHVSQMATRRVDRAESVVKRDMEVYVKVVSIKEGGKYSLSMKDVDQNTGRDLIPLK
KPSDDDDLGRSNPSYRTKDGQVTKTGISGIRIVEESNVAPSRRPLKKMSSPERWEAKQLI
AAGALKASEFPDYDEDGDGMLYQEEGAEEELEIEMNEEEPAFLQGQTRYSVDMSPVKIFK
NPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELR
GVGLSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVI
GETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR
FEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLLKR
RLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQI
HLTEPEGDILLFLTGQEEIDSACQSLYERMKNLGKNVPELIILPVYSALPSEMQSRIFDP
PPPGTRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQR
AGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMD
PPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILT
MIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFI
QSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTL
VENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVADPT
HMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaggagctgaacaagctaaaccatctctctctcgtctccaacatctgcaac
gaattggagacgcatctaggtcaagcgccgaaggatctggccgagtacatcatccatctc
ggccgcaactccgaaaccgccgacgaactcgacaagaagctgaagaaggacggcgcggag
cttcctgattatttcgtccgctcgctgttaaccgtaatccacgggatctaccctccgcag
cccaagtccgacgatgtagaagaagatggcggcgaaaaagagagattcaaaggcttggcg
attagggatactaaggataaggtcaaggagctcgagaaggagattgagagggaggctcag
gagaggcagagagaggaggatcggaatcggagaggttccggtagggatagggatcgagat
gatagaagggatcggtatggagatggtgatgatagaagaagtgataggcataggggaaga
tatgatgaaggtgataggcataggggaagagaccgtggagatgatagaggtggtaggcat
agggggagatcacgtggcgatgatgaaggaggagagggaagaagtgataggcgtagagat
cgtggtgtgcaggatgagtacactggtgcgaatgagcctgagttgtatcaggtatacaaa
ggtagagtgactagggtgatggactctggctgctttgttcagtttgataggtttagaggg
aaagaaggtttagtccatgtttctcagatggctactagaagggttgatagggctgagagt
gtggtgaagcgggatatggaagtttatgttaaagttgtatctattaaagagggtggtaag
tatagtctttctatgaaggacgttgatcagaacacggggagagacttgatcccgctgaag
aagccttcagatgatgatgatttagggaggagtaatccgtcgtatagaacaaaggatggg
caagtcaccaagactgggatttcagggattcggattgttgaggagagtaatgtcgcgcct
tcacgtaggccactgaagaagatgagctcccctgagagatgggaagcgaagcagctcatt
gctgctggtgctttgaaagcgagtgagtttcctgattacgatgaggatggagatgggatg
ctttatcaagaggaaggtgctgaagaagagcttgagattgagatgaatgaagaagaacct
gccttcttacaagggcagactaggtactctgttgacatgtctcctgttaagatcttcaaa
aatccagaaggttccttgagtcgtgctgctgcgcttcagtctgcgctcaccaaggagagg
agggaaatgagggaacagcagcagagaacgatgcttgactccatccctaaggatctgaat
cgtccttgggaagatcctatgcctgaaactggtgaaagacatcttgctcaggagcttaga
ggtgtcggtttatctgcttatgacatgcctgagtggaagaaggatgctttcggtaaaact
ccaacttttggacaaagatcaaagctttctatccaggagcaaagggagagtcttcctata
tacaagctgaaaaaggagctaatacaggctgtgcacgacaaccaagttttggtggtcatt
ggtgagactgggtcagggaagacaacacaggttactcagtatcttgcagaagcaggttac
acaactaaaggaaagattggatgtactcagcctcgtagagtcgctgcaatgtctgttgca
aagagagtagctgaggagtttggttgtcgtttgggagaggaagtaggatatgcaattcgg
tttgaagattgtacgggaccagatacagtgatcaagtacatgactgatggtatgcttcta
agggagattctgattgatgaaaacctctctcagtactctgttataatgcttgatgaagct
catgagcggacaattcacactgatgtgttgtttggtcttctaaagaagctgttgaaacgc
aggcttgaccttcgtctgattgtcacatccgccacactggatgcagagaaattctctggg
tatttcttcaactgcaacatctttacaatccctggaagaacctttcctgtagagattctg
tataccaaacagccagaaagcgattacctggatgcagctctgatcacagttcttcagatt
cacttgactgagccagagggtgatattcttctcttcttgacgggacaggaagaaatcgat
tctgcgtgccagtctctctacgagaggatgaaaaatctaggtaaaaacgttcctgaactc
atcatacttcctgtttacagtgccctccctagtgaaatgcagtctagaatatttgatcct
cctcctcctggtacccggaaagtggttgtagctacaaatattgcagaagcctctttgacg
atagatggaatttattatgttgttgatcctgggtttgcaaagcagaacgtgtacaatcca
aagcaaggactagagtcgcttgtcatcactccaatctcacaggcatcggcgaagcagagg
gctggacgtgctggtcgtactggtcccgggaaatgttaccgtctctacacagagagcgca
taccgtaatgagatgcctcctacatcaatccctgaaatccagaggattaaccttggaatg
acaaccctgaccatgaaagcaatgggcattaatgacctgttgtcgtttgatttcatggat
ccaccccaaccgcaagcgttgatctctgctatggaacagttgtacagcttgggagctttg
gatgaggaaggactgttgacaaagctaggtagaaaaatggctgagtttcctcttgagcca
ccgctctctaagatgttgctagcgagtgttgatcttgggtgcagcgatgagattttaacg
atgattgctatgatccagacgggaaacatattttatagaccgagggagaagcaagctcaa
gcagaccagaagagggcaaagtttttccagcctgaaggtgaccacttgacattgctagct
gtatatgaagcttggaaagctaagaacttctcaggtccatggtgttttgagaacttcata
cagtcaagatcactacgacgtgctcaagacgtgaggaaacagcttctcagcattatggac
aaatataaactagacgtggtgagtgcgggaaagaacttcacgaagataaggaaagcgatc
acagcaggattcttcttccatggagcaagaaaagatccgcaggaaggttacaggacgctt
gtggagaatcaaccggtttacatacatccgagcagtgcattgttccagagacaaccagat
tgggtgatatatcacgatcttgtgatgacgaccaaggagtacatgcgagaagtgaccgtg
attgacccgaagtggcttgttgagctagctccaaggtttttcaaagtggctgatccaacc
catatgagcaagcgtaagcgccaggaacgcatagagcctttgtatgatcgttatcacgag
cccaactcatggcgtctcagtaagagacgtgcttga
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integrated database retrieval system