Bradyrhizobium sp. S23321: S23_15390
Entry
S23_15390 CDS
T01796
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brs
Bradyrhizobium sp. S23321
Pathway
brs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
S23_15390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brs03400
]
S23_15390
Enzymes [BR:
brs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
S23_15390
DNA repair and recombination proteins [BR:
brs03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
S23_15390
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DUF4232
Other DBs
NCBI-ProteinID:
BAL74756
UniProt:
I0G1W9
LinkDB
Position
1617805..1620474
AA seq
889 aa
MLRKLSTYRQKRDFEQTPEPSGRTAVTRSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWDCEDPEAGFK
KGDLKFTLHGDKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEFASESEDILSEDKSVASG
RAMAEIAKGKGRAPKPFMLAKGATTKADAVWQSNRAEETKGRTVKAAPRAALKTSKAAKK
KAMTASTAKEVSEMPDFVAPQLCTLVERPPSGDGWCHEIKFDGYRVQLRIEDGKATLRTR
KGLDWTDKFAAIAKEAATLPDAMIDGEIVALDHHGAPNFSSLQAALSDGKTNELIFFAFD
LLFAEGLDCRRLPLSERKTRLKKLVEAPKKKVSQIRFVEHFESGGDAVLQSACKLELEGI
VSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMAGVHRGDHLAFVGMVG
TGFGADKVKRIMPFLKEAAASKSPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAEAPADIALAKPSAKRRVPAKAAKPSKPSGSAEVMGVVISKPD
KELWPDAGDGEGVSKLDLARYFEAVGAWMIEHLKGRPCSILRAPDGIGGEKFFQRHAMPG
SSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPNAYDTPGRLVFDLDPA
PDVDFADVVDAAKEMRQRLTDLGMESFCKTTGGKGLHVVVPLLHGVRDRVSWKEAKAFAQ
GVCQWMADDEPERYLLNMSKKLRNGKIFLDYLRNDRMSTAVGPLSPRARDGATVSMPVTW
AQVKSDLDPKRYTVRTVPGLLARSKAWDGYDDAAASIKAAMKKLAGKKK
NT seq
2670 nt
+upstream
nt +downstream
nt
gtgctgagaaagctatccacctatcgacagaagcgcgatttcgaacagacgccggagccg
tcgggcaggaccgccgtcacacgttcaaagcagcggcgcttcgtgatccagaagcatgat
gcgacccggctgcattacgatctccggctcgaattcgacggcgtcttcaagtcatgggcg
gtgacgaaggggccctcgctcgatccgcacgacaagcggctggcggtggaggtcgaggac
catccgctcgactatggcgatttcgaagggaccatcccggaaggacagtatggcggcggc
accgtgatgctgtgggaccgtggcacctgggactgcgaggatcccgaagccggcttcaag
aagggtgatctgaagttcacgctgcacggcgacaagttgcacggaagctgggtgctggtg
cggatgcgcaacgaccgcaccggtggcaagcgcaccaactggcttctgatcaagcaccgc
gacgagttcgccagtgagagcgaggacattctcagcgaggacaagtcggtggcgtccggc
cgcgcgatggcggagatcgccaaggggaagggccgcgcgccaaaaccgttcatgctggcg
aagggcgccacgaccaaggccgatgcagtctggcagtcgaaccgcgcggaggagaccaaa
gggcgtaccgtcaaagcggcgccccgcgcggcactgaagacctccaaggcggccaagaaa
aaggccatgactgcgtcgactgccaaggaggtctcggagatgccggacttcgtcgcgccg
cagctctgcacgttggttgaacgcccaccgtcgggagatggctggtgccacgagatcaag
ttcgacgggtaccgcgtgcagctccggatcgaggatggcaaggccactctgaggacgcgc
aagggtctcgactggaccgacaagtttgccgcgatcgcgaaggaagccgccacgttgccg
gacgcgatgatcgacggtgagatcgtcgcgctcgaccatcacggcgcaccgaatttttcc
tcgctccaggccgcgctgtcggatggcaagaccaacgagctgatcttcttcgccttcgac
ctgctgttcgccgagggcctcgattgccgccggctcccgctcagcgagcgcaagacccgc
ctcaagaagttggtggaggcacccaagaagaaagtgagccagatccgctttgtcgagcat
ttcgagagcggcggcgatgcggtgctgcaatcggcctgcaagctcgagctcgaaggcatc
gtgtcgaagaagctggatgcgccgtatcgctccggccgcaccgagagctggaccaaggca
aaatgccgcgccggacatgaggtcgtgatcggcggctggaagaccaccgcaggaaaattc
cgctccctgatggccggcgtgcatcgcggcgatcacctcgcctttgtcggcatggtcggc
accggctttggcgccgacaaggtcaagcgcatcatgccgttcctgaaggaggcggcggca
agcaagagtccgttcggcggcaagaatgcgccgaagaagacccgcgacgtgcattggctc
aagcccgagctcgtcgccgagatcgagttcgccggcttcaccgccgatggcaatatccgc
caggccgcgttcaagggcctgcggcaggacaagccggccgaggaggtcgaggcggaagcg
cccgccgatatcgcccttgccaagccctccgcgaaaaggcgcgttccggcgaaggcggcc
aagccgtcgaagccgagtggcagcgccgaagtcatgggcgtcgtgatttccaagccagac
aaggagttgtggccggacgccggcgacggggagggcgtgtcaaagctcgatctcgcccgc
tatttcgaggcggtcggcgcctggatgatcgagcatctgaaaggccgcccctgctcgatc
ctgcgcgcgcccgacggcatcggcggcgaaaaattcttccagcgccacgccatgccgggc
agctcgaacctgctcgaactcgccaaggtctcgggcgaccgcaagccctatttgcagatc
gaccgcgtcgaggggctcgcggcggtcgcacagatcggcggcctcgagctgcatccctgg
aattgcgcgccgaatgcttacgacacgcccggccggctggtgttcgatctcgatccagcg
ccggatgtggatttcgccgatgtcgtcgatgccgccaaggagatgcggcagcgcttgacc
gatctggggatggagagtttctgcaagaccaccggcggcaaggggctacacgtggtggtg
ccgttgctccacggcgtgcgcgacagggtcagctggaaggaagccaaggctttcgcacaa
ggcgtctgccagtggatggcggatgacgagcccgagcgctatctgctcaacatgtccaag
aagctgcgcaacgggaagatctttttggactatctgcgcaacgatcggatgtcgacagcg
gttggaccgctgtctccgcgtgctcgggatggcgcgacggtctcgatgccggtgacctgg
gcacaggtgaagagcgatctcgatccgaagcgctatacggtgcgaaccgtgccgggcttg
ctggcgcgctcgaaggcgtgggatggctatgacgatgcggccgcgtcgatcaaggcggcg
atgaagaagctggcggggaaaaagaagtag
DBGET
integrated database retrieval system
