Bipolaris sorokiniana: COCSADRAFT_103777
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Entry
COCSADRAFT_103777 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12880
THO complex subunit 3
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03013
Nucleocytoplasmic transport
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_103777
09122 Translation
03013 Nucleocytoplasmic transport
COCSADRAFT_103777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_103777
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_103777
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
COCSADRAFT_103777
Spliceosome [BR:
bsc03041
]
Complex C
Other components
EJC/TREX
COCSADRAFT_103777
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
COCSADRAFT_103777
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
adh_short
adh_short_C2
WD40
ANAPC4_WD40
KR
Polysacc_synt_2
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
19129865
NCBI-ProteinID:
XP_007705902
JGI:
Cocsa1_103777
UniProt:
M2S7T5
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MPPPVRARPIKKDDFETVFKKLKTSVYQDSVRPAAVSSSHYIRSISWNASGTFIATGAAD
KTLRIWNPEKTNVKNSTELRTPNVPPLTNLERVSFHPINENELASCGTDGMVRFWDIRSK
ASVGEVKVGEQPFTLAWTPDGNEIVVGRKDNLLVNVDRAALSIISEHRQPLQTNQCVFDW
SGNHLYSTAGDGSVRLLRYPSFENALTLNAHTSACYAVSMSPSGEYLAAGGGDALVSLWD
TQEWICVRTLELTGGLVKSVDFSFDGSYITAGSDDKEEKKIRIAHVESGETVHTIDVPTP
AAHVAWHPCRYILAYSADNLGLKILPFSTSLKRLQYSRIRLVTMDVTAPIQPNSLFSAKG
LVVVITGGGSGLGLAIASALYQNGAEKVYILGRRQDVLRNAISNLQSDIAYKPHSTSVLN
DIVCDVTDLDSVKAAAEHIKKDVGYVDVLINNAGVLGPRNGQDIYKASSIHELADAMTSD
YDGWASAMAINTQSVIGVSATFLPLLEAANTRRGWAPGKVTGTGNPRARDTAKLAEHGID
ADDDRMAHIITVASVASYMRWVSAGLAYNASKSAAAHLGKMMATFLAEWGVRSNVVCPGP
YPSDMTAGITPVYGTSQIPQGRMGGLNDIAGLMLFLVGKGGAYVNGVAQLTDGGRAGVFP
ATY
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccccagtccgcgcgcgtccgatcaagaaagatgacttcgagacggtctttaag
aaactcaagacatccgtctaccaagacagcgtgcgcccggccgccgtctcgtcgtcgcat
tacatccgctcgatatcgtggaacgcctctggaacttttatcgccacgggagctgcagac
aagacattgcgcatatggaatcccgagaaaaccaacgttaagaactccaccgagcttcgt
acgcccaacgtgcctcccttgaccaacctcgaacgcgtatctttccaccccatcaatgag
aatgagcttgcaagctgcggtaccgatggtatggtcagattctgggatattcgctccaaa
gctagtgtgggcgaggtcaaggtcggcgagcagccctttacgctggcatggacaccagat
ggcaatgaaatcgttgtaggacgaaaggacaacctgctcgtcaatgtcgatagagcagct
cttagtatcatctccgagcaccgtcagcccctccagactaaccagtgtgtctttgattgg
tccggtaaccacctttactcgacagctggtgatggaagcgttaggttactacgctatccg
tcgttcgaaaacgctctcacactgaacgcccatacttctgcatgctatgctgtctccatg
tcacctagcggcgaatacctggcagctggcggaggagatgcgttagtttcactttgggat
acacaggaatggatttgcgtgagaaccttggagttgacaggaggcctcgttaagagcgtg
gacttctcgtttgatggcagctacattacagctggctccgacgacaaggaagaaaagaag
attcgcatcgcgcatgttgaatcgggcgaaactgtgcacaccattgatgttcctacaccc
gcagcgcacgtcgcatggcacccatgccgatatatactggcctattcagccgacaacctg
ggcctcaagattctgccgttttctacaagtctcaaacgtttacaatactctcgaattaga
ctggtcaccatggacgtcacagcacccatacaaccgaatagcctattctccgccaaggga
ctggtagtagttattaccggcggcggctctggactcggcctcgccatagcctcagcactc
taccaaaacggcgctgaaaaagtctacatcctcggccgccgacaagacgtcctccgcaac
gccatctccaacctccaatcagacatagcatacaaaccgcatagcacttccgtcctcaac
gacatcgtctgcgatgtcaccgacctcgactccgtcaaggccgccgccgagcatatcaag
aaagatgttggctacgtcgacgtgctaatcaacaatgccggtgtccttgggccgagaaac
ggacaggacatctacaaagcatcgtccatccacgaactcgccgacgcaatgacatcagac
tacgatggctgggccagtgccatggcgatcaacacgcaatccgtcatcggtgtctccgcg
actttcctccctctgctcgaagcagcaaatacacgccgtggatgggcaccgggcaaggtc
accggcacagggaacccgcgtgcccgtgacacggcgaagctggcagaacatggtatcgac
gccgacgatgaccgcatggcgcacatcatcaccgttgcatccgtcgcttcgtacatgcgc
tgggtctccgcgggtctcgcgtacaatgccagtaaatccgctgccgcgcacttgggcaag
atgatggcgacgtttctggcggagtggggggttagaagtaatgttgtttgcccgggtcct
tatccgagtgatatgacggcgggtattacgcccgtgtatggaacgagtcagataccgcag
ggacggatgggcgggttgaacgacattgcggggttgatgctttttttggtgggcaagggg
ggcgcgtatgttaatggggttgcacagttgacggatggagggagggcgggggtgtttcct
gctacgtattag
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