KEGG   Bipolaris sorokiniana: COCSADRAFT_350522Help
Entry
COCSADRAFT_350522 CDS       T03124                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03030  DNA replication
bsc03410  Base excision repair
bsc03420  Nucleotide excision repair
bsc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCSADRAFT_350522
   03410 Base excision repair
    COCSADRAFT_350522
   03420 Nucleotide excision repair
    COCSADRAFT_350522
   03430 Mismatch repair
    COCSADRAFT_350522
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsc03032]
    COCSADRAFT_350522
   03400 DNA repair and recombination proteins [BR:bsc03400]
    COCSADRAFT_350522
Enzymes [BR:bsc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCSADRAFT_350522
    6.5.1.6  DNA ligase (ATP or NAD+)
     COCSADRAFT_350522
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     COCSADRAFT_350522
DNA replication proteins [BR:bsc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    COCSADRAFT_350522
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     COCSADRAFT_350522
DNA repair and recombination proteins [BR:bsc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCSADRAFT_350522
   NER (nucleotide excision repair)
    Other NER factors
     COCSADRAFT_350522
   MMR (mismatch exicision repair)
    Other MMR factors
     COCSADRAFT_350522
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF5427
Motif
Other DBs
NCBI-GeneID: 19138029
NCBI-ProteinID: XP_007696311
JGI: Cocsa1_350522
UniProt: M2TJA7
LinkDB All DBs
Position
Unknown
AA seq 911 aa AA seqDB search
MGLVRYWSDAFGSSGRFNRHPRNGGANGYERSGPSKRRKKNDGSGKPVRSLDYFFAKQAA
KATPKDAPTNPTSNGAPAEQDYSGLTDEELARKLQEKWDKEDRERGQNVAPVSSNELYEE
PEKSTTNTAANEGSDNPKKSESPAFDVALKEIPELAPAPKKNTLTLQSTASEEDTITANI
PFDLSPLEFDPAEYIPDLEKHWVTDGGHATYALLTRCFILINSTTSRIKIVDTLVNLLRT
IIESDSSSLLPAVWLSTNAISPPYINLELGLGGSAISKALKKVCGLDNASLKALSSKHGD
AGDVAFEAKKKQSFTLRKPKPLTIKSVFDSLIKIANSKGNGSVENKQRIVERLVQDARGA
EESRYVVRTLVQHLRIGAVKTTMLIALSRAFMLSKPPGAEFETRNRKDTAKMKKEELVEI
YSRNEEIVKACFARRPNYNDLIPVLLEIGVCDELLVRCGLALHIPLRPMLGSITRDMGEM
LTKLQGRDFACEYKYDGQRAQVHCDAKGKVTIFSRHLEVMTDKYPDLVALVPKIRSEGVS
SFILEGEVVAVDRESGDLKPFQTLANRARKDVVIGAVTIDVCLFAFDLMYLNGEELLNRS
FRERRSLLQSLFVEIPHHFTWVKSLDATSADVEAVQTFFQGAIDTKCEGIMVKVLDNLPN
PDLLAEIDEPGLEKTPSLPPTPKKKKPSKSKAKGKSTEAETDEPKVSGRRKALLSTYEPD
KRLDSWLKVKKDYSTTSETLDLIPIAAFHGSGRKAAWWSPILLAIRNAETGQLEAVTKCM
SGFTDAFYKANRAKYDPGDPDSTTVLPGKPHYVEYNGGAGTPAVWFEPQEVWEVAFADLT
LSPTYTAAIGLVSDERGLSTRFPRFLRVREDKSIEEATEAEELASLYRKQEAKAPKKDNG
GEREVEDEDME
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgggtctcgtgagatattggagcgatgcttttggttcatctgggaggttcaaccgtcat
cccaggaatggtggtgcgaatgggtacgagcgtagtggcccgtcgaagcgcagaaagaag
aatgatggatcaggaaagcccgttcgtagcttagactacttcttcgcaaagcaagcggca
aaagcgacacccaaggacgcgcctacgaatcccacgtctaatggagcgcctgcagagcaa
gactactcgggattgacggatgaagaacttgcccgcaaactccaggaaaaatgggataag
gaagatcgcgagaggggtcagaatgtggcgcctgtaagctcaaatgagttgtatgaagag
ccggagaagtctactacgaatacggcggcgaatgaaggctcagacaacccaaagaaatcc
gaatcaccagcttttgatgttgctttgaaggaaatacccgagctcgcacctgcgccgaag
aaaaacactctcacgctacaatcaactgcatctgaagaagatacaataaccgcaaacata
cccttcgacctaagcccgcttgaatttgatcctgcggaatatatacccgacttagaaaag
cattgggtaacagatggaggacatgcaacctatgctcttctgacaagatgcttcattctg
atcaatagcaccacgagccgcattaagattgtagatactcttgtcaacctgttacggaca
atcatcgagagcgactcaagcagcctactcccggctgtctggctttcaacgaacgcgata
tcgccgccatacattaatcttgagctaggacttggagggtctgcaatctccaaggcgttg
aagaaggtgtgtggattggacaatgcaagcttgaaggccttgagcagcaagcacggagac
gctggcgatgtggcatttgaagcaaagaagaagcagtcatttacccttcgcaaaccaaaa
ccgttgaccatcaagagcgttttcgactctttgattaagattgcaaatagcaagggaaat
ggcagtgttgaaaacaaacagagaattgtcgagagattggtccaagatgcgagaggtgcg
gaagaaagtcgctatgtcgtacgaaccttggtacagcatttgcgcataggggctgtcaag
accacgatgctaattgcattgtcgcgagcattcatgttatcgaagcctccgggcgctgag
ttcgagacacgcaaccgaaaagatacggcgaaaatgaagaaagaggagctggttgaaatt
tacagcaggaacgaggaaatcgtcaaagcatgctttgcccggagaccaaactacaacgac
ctcatacctgtgcttcttgagattggtgtctgcgatgagctgctcgtgcgttgcgggcta
gcccttcatattcctcttcggcccatgttgggtagcatcacacgcgacatgggcgagatg
ctcaccaagctgcaaggccgagattttgcttgcgaatacaagtacgatggacagcgagca
caagtccattgcgatgcaaagggcaaagtcacaatcttttcgcgacacctggaagtcatg
acggacaagtatcccgatttggtggcgctagtacccaagattcggagcgaaggcgtgtcg
agctttatcctcgaaggtgaagtggtagccgttgatcgagagagtggtgacctcaagccg
ttccagacactagccaaccgcgcaagaaaggatgtagtcatcggagcagtaacaatcgac
gtttgtctcttcgcgttcgatctcatgtacctcaacggcgaggaacttcttaaccgatcc
ttcagagaacgaagatcgctacttcaaagcctgttcgtcgagatcccccaccacttcacc
tgggtcaaaagcctcgatgccacatccgccgacgtagaagccgtccagaccttcttccaa
ggcgccatagacaccaaatgcgaaggtataatggtcaaagtcctcgacaacctccccaac
ccggatctcctcgccgagatagatgaacccggtctcgaaaagacgccctcactgccccct
acgccgaagaaaaagaaacctagcaagtcaaaagcaaaaggaaaatccacagaggctgaa
acagacgagcccaaagtctcgggtcgccgcaaagccttgctatcaacatacgagcccgat
aaacgcctcgactcatggctcaaggtaaagaaagactacagcaccacctcggaaacactt
gacctaatccccatcgcggcattccacgggtctggcagaaaagcagcatggtggtcccca
atcctcctcgcaattcgcaacgcagaaacaggccaactcgaggcagtcacaaagtgcatg
tctggcttcacagacgccttttacaaagccaaccgcgccaagtacgatcccggagatcct
gactcgactaccgtgttacccggtaagccacactatgtggagtacaatggtggggcgggc
acgccggctgtgtggtttgagccacaggaggtgtgggaggtggcttttgcggatttgacg
ctcagtcctacgtacacggctgcgattgggctggtgagtgacgagcgtgggctgagtacg
aggtttccgcggttcctgcgggtgagggaagataagagtatcgaggaggcgacggaagcg
gaggagttggcgagtttgtataggaagcaggaggccaaggcgccaaagaaggacaatggt
ggtgagagagaagtggaagatgaggatatggagtag

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