Blastococcus saxobsidens: BLASA_0779
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Entry
BLASA_0779 CDS
T01752
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLASA_0779 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsd03400
]
BLASA_0779 (mfd)
Enzymes [BR:
bsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLASA_0779 (mfd)
DNA repair and recombination proteins [BR:
bsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLASA_0779 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
MFD_D3
AroM
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCG01732
UniProt:
H6RSI1
LinkDB
All DBs
Position
752229..755786
Genome browser
AA seq
1185 aa
AA seq
DB search
MTLRGVLDVVLTDPGMARVVASAGRASLAVTAPPPVQPLVAAALAARQPGAGVPVLVVTA
GERDADATADLLRCFVPDRRVEVFPAWETLPHERMSPRADTVGRRLAVLRDLTHPGANGT
IDVLVAPVRSVLQPLAPGLGDLVPVELEPGDSAELDGVAQALSDAAYTRVELVEKRGEFA
VRGGLLDVFPPTEPHPVRVEFWGDEVDELRYFSAADQRSLDERPDRLWAPPCRELLLTDE
VRARAAALAVEHPGLIEVLGKLAEGIAVEGMESLTPALIGDEAMQLLTDLVPAGTHVLVS
DPERVRSRAADLVRTADEFLAASWATAAEAGEAPLDLGASAFRDLADVEAGARTRGLPWW
TTGVFALGGGLGDEGTADEGQVTLDATPVERFHGDQGAAVERMRGWHRDGWRVVVTFAGP
GPAQRAADQLTETELGVRLVPDVATAPDAGLTHVTQGNLEAGFAFPGVGLALVTEHDLTG
QRGTTMRDAVKMPARRRNAVDLVQLQPGDLVVHEQHGVGRYIEMISRTVNGGQRDYLIVE
YAPSRRNQPPDRLFVPTDALDQLTRYVGGEAPALSKLGGADWQKTKSSARKAVKQIAGEL
IRLYSARMATQGHAFGPDTVWQRELEDAFPFQETPDQLAAIDEVKADMQQTVPMDRIICG
DVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLANQHVKTFSERVAQFPVTVKVLSRFQS
DKETTEILRQLAAGEIDILVGTHRLLQPTTRWKDLGLVIVDEEQRFGVEHKEYLKTMRTA
VDVLSMSATPIPRTLEMSLTGIREMSTILTPPEERHPVLTYVGAWSDKQMAAAIRRELLR
DGQVFVIHNRVQSIDKAAAKIRSLVPEARIAVGHGQMKEHELERIMVGFWEKEYDVLVAT
TIVESGLDIPNANTLIVDRADTFGLSQLHQIRGRVGRGRERAYAYFTYDPTRTLTETSVD
RLTTIANNTDLGAGMAVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRLVGEAVADYRA
QVTGEEAPAEPVEVRVDLPVDAHLPHDYVPGERLRMEAYRKVASIQDDEQAQAVLDELTD
RYGAPPAPVLNLLAVARFRVAMRALGVTEVSLQGRTIRIGPVDLPESKQMRLARLADGAS
YKAAVRTISLKVPVGPDRRTPLRDVALLENLHSVLRAVLDQPVAA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgcgcggcgtgctcgacgtcgtcctcaccgaccccggcatggcccgcgtggtc
gcctcggccgggcgcgcgtcgctcgccgtcaccgctccgccgccggtccagcccctcgtc
gccgccgcgctggccgcgcggcagccgggggcgggcgtgccggtcctcgtcgtcactgcc
ggcgagcgggacgccgacgcgaccgcggacctgctccgctgcttcgtgccggaccggcgg
gtcgaggtcttcccggcctgggagacgctgccccacgagcgcatgagcccccgggcggac
accgtcgggcgccggctggcggtgctgcgcgacctcacccaccccggcgcgaacggcacg
atcgacgtcctggtcgctccggtccggagcgtgctgcagccgctggcccctgggctcggc
gacctggtgccggtggaactggagccgggggactccgcggaactggacggcgtcgcccag
gcactgtccgacgccgcctacacccgggtggagctggtcgagaagcgcggcgagttcgcc
gtccgcggtgggctgctcgacgtcttcccgcccaccgagccgcacccggtgcgggtggag
ttctggggtgacgaggtcgacgagctccgctacttctccgccgccgaccagcgctcgctc
gacgagcgccccgaccggctgtgggcaccgccctgccgcgagctgctgctcaccgacgag
gtgcgggcccgtgcggcggcgctggcggtcgagcaccccggcctgatcgaggtcctgggc
aagctcgccgagggcatcgccgtcgagggcatggagtcgctgacccccgccctgatcggc
gacgaggccatgcagctgctcaccgacctcgtgccggcgggcacgcacgtcctggtctcc
gaccccgagcgggtgcgcagccgggcggcggacctggtgcgcaccgccgacgagttcctc
gccgcctcgtgggcgaccgccgcggaggcgggagaggcgccgctggacctcggtgcgtcc
gccttccgcgacctcgccgacgtcgaggccggcgcgcgcacccgcgggctgccgtggtgg
accaccggggtgttcgcgctcgggggtgggctgggggacgagggcacggccgacgagggc
caggtgaccctcgacgcgactccggtcgagcggttccacggcgaccagggcgccgccgtg
gagcggatgcgcggctggcaccgcgacggctggcgggtcgtcgtcaccttcgccggcccc
ggccccgcccagcgggccgccgaccagctcaccgagaccgagctcggcgtccggctggtg
cccgacgtcgccaccgccccggacgccgggctgacccacgtcacccaaggcaacctcgag
gcggggttcgccttccccggtgtcggcctggcgctggtcaccgagcacgacctgaccggt
cagcgcggcacgacgatgcgcgacgcggtgaagatgcccgcgcggcggcgcaacgccgtc
gacctggtgcagctgcagccgggtgacctcgtggtccacgagcagcacggcgtcggccgc
tacatcgagatgatcagccgcacggtcaacggcggtcagcgcgactacctgatcgtcgag
tacgccccgtcgcggcggaaccagccgccggaccggctgttcgtgccgaccgacgcgctg
gaccagctcacccgctacgtcggcggcgaggcccccgcgctgtccaagctcggtggcgcc
gactggcagaagaccaagagctcggcccgcaaggcggtcaagcagatcgccggcgagctc
atccggctgtactccgcgcgcatggccacccaggggcacgccttcgggcccgacaccgtc
tggcagcgggagctggaggacgccttcccgttccaggagacgcccgaccagctggccgcg
atcgacgaggtcaaggcagacatgcagcagacggtgccgatggaccggatcatctgcggc
gacgtcggctacgggaagaccgagatcgcgatccgggccgccttcaaggcggtgcaggac
ggcaagcaggtcgccgtcctggtgccgacgacgctgctggccaaccagcacgtcaagacc
ttctccgagcgggtcgcgcagttcccggtgacggtgaaggtgctctcccggttccagtcg
gacaaggagaccaccgagatcctccggcagctcgccgccggcgagatcgacatcctggtc
ggcacgcaccggctgctgcagccgaccacccggtggaaggacctcgggctggtcatcgtc
gacgaggagcagcgcttcggcgtcgagcacaaggagtacctgaagacgatgcggacggcg
gtcgacgtcctgtcgatgtcggccacccccatcccgcgcaccctggagatgagcctcacc
ggcatccgcgagatgtcgacgatcctcaccccgcccgaggagcggcaccccgtgctcacc
tacgtgggcgcctggagcgacaagcagatggccgccgcgatccgccgcgagctgctgcgc
gacggccaggtcttcgtcatccacaaccgggtgcagtcgatcgacaaggcagcggcgaag
atccgctccctggtgcccgaggcccggatcgccgtcgggcacgggcagatgaaggagcac
gagctcgagcggatcatggtcggcttctgggagaaggagtacgacgtcctggtcgcgacg
acgatcgtcgagtcgggcctggacatcccgaacgccaacacgctgatcgtcgaccgcgcc
gacaccttcgggctctcccagctgcaccagatccgcggccgggtcggccggggccgggag
cgggcctacgcctacttcacctacgaccccacccgcacgctcaccgagacctcggtcgac
cggctgaccaccatcgccaacaacaccgacctcggcgccggcatggcggtggcgatgaag
gacctggagatccgcggctcgggcaacctgctcggcggcgagcagtccgggcacatcgcc
ggtgtcggcttcgacctctacgtgcggctggtcggcgaggccgtggccgactaccgggcg
caggtcaccggcgaggaggcgcccgccgagccggtggaggtccgcgtcgacctgccggtg
gacgcgcacctgccgcacgactacgtgcccggcgagcggctgcgcatggaggcttaccgc
aaggtggcctcgatccaggacgacgagcaggcgcaggcggtgctcgacgagctcaccgac
cggtacggcgccccgccggcgccggtgctcaacctgctggccgtggcccggttccgggtc
gcgatgcgggcgctcggcgtcaccgaggtgtcgctgcagggccgcaccatccggatcggc
ccggtcgacctgccggagtccaagcagatgcggctcgcccggctggccgacggcgcgtcc
tacaaggccgccgtgcggaccatctcgctcaaggtgccggtgggccccgaccgccgcacc
ccgctgcgcgacgtcgccctgctggagaacctgcactcggtgctgcgcgcggtgctcgac
cagccggtcgctgcgtag
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