Burkholderia seminalis: WJ12_20210
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Entry
WJ12_20210 CDS
T04851
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bsem
Burkholderia seminalis
Pathway
bsem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WJ12_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsem03400
]
WJ12_20210
DNA repair and recombination proteins [BR:
bsem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WJ12_20210
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WJ12_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_21
SMC_N
nSTAND1
AAA_16
RsgA_GTPase
AAA_22
AAA_23
AAA_25
NACHT
AAA_18
Viral_helicase1
AAA_33
UvrA_DNA-bind
ATPase
DnaJ_CXXCXGXG
DUF4350
RNA12
Ntox1
Motif
Other DBs
NCBI-ProteinID:
AOJ27198
LinkDB
All DBs
Position
3:1001207..1007101
Genome browser
AA seq
1964 aa
AA seq
DB search
MSSSNLIRIRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETF
SAYARQFLDRMDRPQVERVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE
LFDRQTARQVRHDTPETIYADLVARTRADDPRVVVTFPVELPEAVSDEEIAQWLSASGYT
RVQAQREVASPTGPRKMLDVVADRFRVQQADKVRVVEAIEASLKRGGGRVNVYVLAPEAE
HAVAEPQVWRFSTGLHDPDSDLRYAEPQAALFSFNSAYGACETCRGFGRVIGVDLGLVIP
DARKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIRRDVAWSELTDAERDWVVNGSPDWN
GKWQSQWYGVKRFFGYLESKAYKMHIRVLLSKYRSYTPCDVCGGARLKTESLQWRLGSKE
NADGVLAPAERFMPRGVDWSRAQLEALPGLTVHDLMLLPIERIRRFFDGISLPSALLDDA
LKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLTKTLFVLDEP
SIGLHPRDLTRIVEAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGTIVYDG
TPADIRSAPTLTGEYLGGRKQVAHASNWARRAVDAHTPRIVLEGASEHNLRDVTVEIPLQ
RLVCVTGVSGSGKSTLLQDVLYPAMARHHGKATESPGAYRSLTGADQVGDVVFVDQSPIG
KTTRSNPASYVGAFDEIRKLFAKAPLALQRGYGAGTFSFNSGDGRCPTCGGSGFEHIEMQ
FLSDVYLRCPDCDGSRYRAEILEVRIERGGRALNIADVLDLTVSEAAAFFATDAEVLRVL
QPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAESAAAANGRRVATEEARIARAKLFM
FDEPTTGLHFDDIAKLMQAFGKLLAAGHSLIVIEHNLDVIRAADWLIDLGPEGGDGGGLV
LCAGTPDDVKACAESHTGVALLQYDREMDAEAALADEGVPLQAVLNAARERRAIEGEDVV
RIVNAREHNLKALDVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYARSI
VQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGLQHCIHDG
TPVTSQSVESIAAQLLRDHRGEHVGLLAPLVVNRKGVYTDLAKWAKARGSTHLRVDGEFV
PVDPWPKLDRFREHTIELPVADLVVSPDNEAELRRRLDETLELGKGVMHLLAPLDGLHDA
MRNNHSTARVGTVKVLSVKRACPVCGTSYPELDPRMFSYNSKHGWCTTCVGTGVTLTREQ
RAAYDDTVLAEDGRGREQTLPSDEQEPEGVGNEPCPDCGGTRLNPTARAVTFDAHPIVEV
AQWTVSDTRRWIDALELTGRDAQIARDIVSEIGSRLAFLEEVGLGYLSLDRAAPSLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDKGNTLVVVEHDEDTI
RRADHIIDIGPGAGKRGGALVAQGAVADLAAQADSVTGRLLARPMTHPLQPRRSVSLPGK
KGGAAVPEAWLTVHGARLHNLRDVTVGIPLARLVAVTGVSGSGKSTLARDVLMTNLLDAV
GRSVLSSPATRRARKAAQQDAPAANRRSSVLARSAPRPSLNVTHAWQGCASLSGWEQIDR
VLEVDQTPIGKTPRSCPATYIGVWDTIRKLFADTLEARARGYTASRFSFNTGDGRCPACE
GQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGRNIGDVLTMEIDEAVEFFAPIS
NIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDITRRGQKAPHTLYV
LDEPTVGLHMADVAKLIRVLHRLVDAGHSVVVIEHDLDVIAEADWIIDLGPEGGVGGGTI
VAAAPPEALVKVGASHTGQALKPVLARTSSDEGEAEREGEARVG
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatccagcaatctgatccgcattcgcggagcacgtcagcacaacctcaagaacctc
gatctcgacctgcgcaccggcgaaatgacggtcgtcacgggcccgtcgggctccggcaag
tcgagtctcgtgttcgacacgctgtatgcggaagggcagcggcgctacgtcgaaaccttc
agcgcgtacgcacgccagttcctcgaccggatggaccgcccgcaggtcgagcgcgtcgac
ggcgtgccgcccgcgatcgcgatcgaccagaccaacccggtccgcagttcgcgttcgacc
gtcggcacgatgaccgagctgaacgatcacctgaagctgctgtacgcgcgcgcggccgag
ctgttcgaccgccagaccgcgcggcaggtgcggcacgacacgccggaaacgatctacgcg
gatctcgtcgctcgcacgcgggcggacgatccgcgcgtcgtcgtcacgttcccggtcgaa
ttgccggaagcggtgtccgacgaggaaatcgcgcagtggctgtccgcgagcggctatacg
cgcgtgcaggcgcagcgcgaagtcgcgtcgcccaccgggccgcgcaagatgctcgacgtg
gtggccgaccgcttccgcgtgcagcaggccgacaaggtgcgcgtggtcgaggcgatcgag
gcgtcgctgaagcgcggcggcggccgcgtgaacgtatacgtgctggcccccgaggccgaa
catgcggtcgccgagccgcaggtgtggcgcttctccaccgggctgcacgatcccgacagc
gacctgcgctacgcggaaccgcaggcggcgctgttctcgttcaactcggcgtacggcgcg
tgcgaaacctgccgcggcttcggccgcgtgatcggcgtcgatctcggcctcgtgattccg
gacgcgcgcaagacgctgcgcggcggcgcgatcaagccgatgcagacccccgcatggaaa
gagtgccaggacgacctgatgcgctacgcggcgaaggccggcatccgccgcgacgtggcg
tggtccgagctgaccgacgccgaacgcgactgggtcgtcaacggttcgccggactggaac
ggcaagtggcagagccagtggtacggcgtgaagcgcttcttcggctatctcgaatcgaaa
gcgtacaagatgcatatccgcgtgctgctgtcgaaataccgcagctacacgccgtgcgac
gtgtgcggcggcgcgcgcctgaagacggaatcgctgcaatggcggctcggctcgaaagag
aatgccgacggcgtgctcgcgccggccgagcgcttcatgccgcgcggcgtcgactggagc
cgcgcgcagctcgaggcgctgccgggcctgaccgtgcacgacctgatgctgctgccgatc
gagcgcatccggcgctttttcgacggcatcagcctgccgagcgcgctgctcgacgatgcg
ctgaagctgctgctcgccgaggtgcgcacgcgcctgaaatacctgtgcgacgtggggctc
ggctacctgacgctcgaccggcagagccgcaccctgtcgggcggcgaggtgcagcggatc
aacctgacgacggcgctcggcacgtcgctgaccaaaaccctgttcgtcctcgacgaaccg
agcatcgggctgcatccgcgcgatctgacacggatcgtcgaggcgatgcagcggctgcgc
gacgcgggcaatacgctggtcgtcgtcgagcacgatccgtcggtgatgctcgcggccgac
cggctgatcgacatggggccgggtccgggcgagcgcggcggcacgatcgtctacgacggc
acgccggccgacatccgttccgcgcccacgctgaccggcgagtatctcggcggccgcaag
caggtcgcgcacgcgtcgaactgggcgcgccgggcggtcgacgcgcatacgccgcgcatc
gtgctcgaaggcgcgagcgaacacaacctgcgcgacgtgacggtcgagattccgctgcag
cggctcgtctgcgtgacgggcgtgtccggttccggcaaatcgacgctgctgcaggacgtg
ctgtatccggcgatggcgcggcaccacggcaaggcgaccgagtcgccgggcgcgtaccgc
agcctcacgggcgcggaccaggtcggcgacgtcgtgttcgtcgaccagtcgccgatcggc
aagaccacgcgctcgaacccggcgagctacgtcggcgcgttcgacgagatccgcaagctg
ttcgcgaaggcgccgctcgcgctgcagcgcggctacggcgccggcacgttcagcttcaac
tcgggagacggtcgttgcccgacctgcggcggctcgggcttcgagcacatcgagatgcag
ttcctgagcgacgtgtacctgcgctgcccggactgcgacggcagccgctaccgcgccgag
atcctcgaggtgcgcatcgaacgcggcggccgtgcgctgaacatcgccgacgtgctcgac
ctgaccgtcagcgaggcggccgcgttcttcgcgaccgacgccgaggtgctgcgcgtgctg
cagccgatcgtcgacgtcggcctcgaatacgtgaagctcggccagccggtgccgacgctg
tcgggcggcgaggcgcagcgcctgaagctcgccggcttcctcgccgaatccgcggcggcg
gccaacgggcgccgggtcgcgacggaagaggcgcgcatcgcgcgcgcgaagctgttcatg
ttcgacgagccgaccaccgggctgcacttcgacgacatcgcgaagctgatgcaggcgttc
ggcaagctgctcgcggccggccattcgctgatcgtgatcgagcacaacctcgacgtgatc
cgcgcggccgactggctgatcgatctcggcccggaaggcggcgacggcggcggcctcgtg
ctgtgcgcgggcacgcccgacgacgtgaaggcctgcgccgaatcgcacacgggcgtcgcg
ctgctgcagtacgaccgcgagatggacgccgaggcggcgctcgccgacgaaggcgtgccg
ctgcaggccgtgctgaacgccgcgcgcgagcgccgtgcgatcgagggcgaggacgtcgtg
cggatcgtcaacgcgcgcgagcacaacctgaaggcgctcgacgtcgacattccgcacggc
aagttcaacgtgatcaccggcgtatcgggctccggcaagtcgacgctcgcgttcgacatc
ctgttccacgaaggccagcgccgctacctcgaatcgctgaacgcgtatgcacgctcgatc
gtgcagccggccgggcggcccgaagtcgacgcggtgtacggcattccgccgaccgtcgcg
atcgagcagcggctgtcgcgcggcgggcgcaagagcacggtcgcgaccacgtccgaagtg
tggcacttcctgcggctgctgtacgtgaagctcggcctgcagcattgcatccacgacggc
acgccggtcacgtcgcaatccgtcgaatcgatcgccgcgcagctgctgcgcgatcatcgc
ggcgagcacgtcggattgctcgcgccgctcgtcgtgaaccgcaagggggtgtacaccgat
ctcgcgaagtgggcgaaggcgcgcggcagcacgcatctgcgtgtcgacggcgagttcgtg
ccggtcgatccgtggccgaagctcgaccgcttccgcgagcacacgatcgaattgccggtc
gccgatctcgtcgtgtcgccggacaacgaagccgaattgcgtcgcaggctcgacgagacg
ctcgagctcggcaagggcgtgatgcacctgctcgcgccgctcgacgggctgcacgacgcg
atgcggaacaaccattcgaccgcgcgcgtcggcacggtcaaggtgctgtcggtcaagcgt
gcgtgcccggtatgcggcacgagctatccggagctggacccgcgaatgttctcgtacaac
agcaagcacggctggtgcacgacctgcgtcggcaccggcgtcacgcttacgcgcgaacaa
cgcgccgcgtacgacgacacggtactcgccgaggacggccgcggccgcgagcagacgctg
ccgtcggacgagcaggaaccggaaggcgtcggcaacgagccgtgcccggactgcggcggg
acgcggctgaacccgaccgctcgcgcggtcacgttcgacgcgcatccgatcgtcgaggtc
gcgcagtggacggtgtcggacacgcgccgctggatcgacgcgctcgaactcaccgggcgc
gacgcgcagatcgcgcgcgacatcgtcagcgagatcggcagccgcctcgcattcctcgag
gaagtcgggctcggttacctgagcctcgaccgtgcggcgcccagcctgtcgggcggcgaa
gcgcagcgcatccggctcgccgcgcagctcggcagcaacctgcagggcgtgtgctacgtg
ctcgacgagccgacgatcggcctgcatccgcgcgacaaccagatcctgctcgacgcgctg
cgcaagctcggcgacaagggcaatacgctcgtcgtcgtcgaacacgacgaggacacgatc
cgtcgcgccgatcacatcatcgacatcggccccggcgccggcaagcgcggcggtgcgcta
gtcgcgcagggcgcggtcgccgatctcgccgcgcaggccgactcggtcacgggtcggctg
ctcgcgcggccgatgacgcatccgctgcagccgcgccgtagcgtgagcctgccgggcaag
aagggcggcgcggccgtgccggaagcgtggctgaccgtgcacggtgcgcggctgcacaac
ctgcgcgacgtcacggtcggcattccgctcgcgcggctcgtcgcggtgacgggtgtcagc
ggctcgggcaagtcgacgctcgcgcgcgacgtgctgatgacgaacctgctcgacgcggtc
ggccgctcggtgctttcgtcgcccgccacacggcgcgcacgcaaggccgcgcagcaggac
gcgccggcggccaaccgccgctcgagcgtgctcgcacgcagcgcgccgcggccgtcgctg
aacgtcacgcacgcgtggcagggctgcgcgtcgctgagcggctgggagcagatcgatcgc
gtgctcgaagtcgaccagacgccgatcggcaagacaccgcgttcgtgtccggccacctac
atcggcgtgtgggacacgatccgcaagctgttcgcggacaccctggaggcgcgtgcgcgc
ggctatacggcgtcccggttctcgttcaataccggcgacgggcgctgcccggcgtgcgaa
ggacaaggcgtgcgcacgatcggcatgagcttcctgcccgacgtgaaggtgccgtgcgac
gtgtgtcacggccagcgtttcaatccggagacgctcgccgtcacgtggcgtggccggaac
atcggcgacgtgctgacgatggagatcgacgaggcggtggaattcttcgcgccgatctcg
aacatcgcgcatccgctgcagctgatgaaggacgtcgggctcggttacctgacgctcggc
cagccgtcaccgacgttgtccggcggcgaggcgcagcgcatcaagctggtcaccgagctg
acgaaggtgcgcgacgacatcacgcggcgtggccagaaggcgccgcatacgctgtacgtg
ctcgacgaaccgacggtcggcctgcacatggcggacgtcgcgaagctgatccgcgtgctg
caccggctcgtcgatgcggggcatagcgtcgtcgtgatcgagcatgatctcgacgtgatc
gcggaagccgactggatcatcgacctcgggccggagggcggtgtgggcggcggcacgatc
gtcgcggcggcgccgcccgaagcgctcgtgaaggtcggcgcgagccatacggggcaggcg
ctcaagccggtgctggcgcgcacgagttcggatgaaggggaagccgagcgcgagggagag
gcgcgcgtcggttga
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