KEGG   Burkholderia seminalis: WJ12_20210
Entry
WJ12_20210        CDS       T04851                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
bsem  Burkholderia seminalis
Pathway
bsem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bsem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    WJ12_20210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsem03400]
    WJ12_20210
DNA repair and recombination proteins [BR:bsem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     WJ12_20210
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      WJ12_20210
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_29 AAA_21 SMC_N nSTAND1 AAA_16 RsgA_GTPase AAA_22 AAA_23 AAA_25 NACHT AAA_18 Viral_helicase1 AAA_33 UvrA_DNA-bind ATPase DnaJ_CXXCXGXG DUF4350 RNA12 Ntox1
Other DBs
NCBI-ProteinID: AOJ27198
LinkDB
Position
3:1001207..1007101
AA seq 1964 aa
MSSSNLIRIRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETF
SAYARQFLDRMDRPQVERVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE
LFDRQTARQVRHDTPETIYADLVARTRADDPRVVVTFPVELPEAVSDEEIAQWLSASGYT
RVQAQREVASPTGPRKMLDVVADRFRVQQADKVRVVEAIEASLKRGGGRVNVYVLAPEAE
HAVAEPQVWRFSTGLHDPDSDLRYAEPQAALFSFNSAYGACETCRGFGRVIGVDLGLVIP
DARKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIRRDVAWSELTDAERDWVVNGSPDWN
GKWQSQWYGVKRFFGYLESKAYKMHIRVLLSKYRSYTPCDVCGGARLKTESLQWRLGSKE
NADGVLAPAERFMPRGVDWSRAQLEALPGLTVHDLMLLPIERIRRFFDGISLPSALLDDA
LKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLTKTLFVLDEP
SIGLHPRDLTRIVEAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGTIVYDG
TPADIRSAPTLTGEYLGGRKQVAHASNWARRAVDAHTPRIVLEGASEHNLRDVTVEIPLQ
RLVCVTGVSGSGKSTLLQDVLYPAMARHHGKATESPGAYRSLTGADQVGDVVFVDQSPIG
KTTRSNPASYVGAFDEIRKLFAKAPLALQRGYGAGTFSFNSGDGRCPTCGGSGFEHIEMQ
FLSDVYLRCPDCDGSRYRAEILEVRIERGGRALNIADVLDLTVSEAAAFFATDAEVLRVL
QPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAESAAAANGRRVATEEARIARAKLFM
FDEPTTGLHFDDIAKLMQAFGKLLAAGHSLIVIEHNLDVIRAADWLIDLGPEGGDGGGLV
LCAGTPDDVKACAESHTGVALLQYDREMDAEAALADEGVPLQAVLNAARERRAIEGEDVV
RIVNAREHNLKALDVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYARSI
VQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGLQHCIHDG
TPVTSQSVESIAAQLLRDHRGEHVGLLAPLVVNRKGVYTDLAKWAKARGSTHLRVDGEFV
PVDPWPKLDRFREHTIELPVADLVVSPDNEAELRRRLDETLELGKGVMHLLAPLDGLHDA
MRNNHSTARVGTVKVLSVKRACPVCGTSYPELDPRMFSYNSKHGWCTTCVGTGVTLTREQ
RAAYDDTVLAEDGRGREQTLPSDEQEPEGVGNEPCPDCGGTRLNPTARAVTFDAHPIVEV
AQWTVSDTRRWIDALELTGRDAQIARDIVSEIGSRLAFLEEVGLGYLSLDRAAPSLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDKGNTLVVVEHDEDTI
RRADHIIDIGPGAGKRGGALVAQGAVADLAAQADSVTGRLLARPMTHPLQPRRSVSLPGK
KGGAAVPEAWLTVHGARLHNLRDVTVGIPLARLVAVTGVSGSGKSTLARDVLMTNLLDAV
GRSVLSSPATRRARKAAQQDAPAANRRSSVLARSAPRPSLNVTHAWQGCASLSGWEQIDR
VLEVDQTPIGKTPRSCPATYIGVWDTIRKLFADTLEARARGYTASRFSFNTGDGRCPACE
GQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGRNIGDVLTMEIDEAVEFFAPIS
NIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDITRRGQKAPHTLYV
LDEPTVGLHMADVAKLIRVLHRLVDAGHSVVVIEHDLDVIAEADWIIDLGPEGGVGGGTI
VAAAPPEALVKVGASHTGQALKPVLARTSSDEGEAEREGEARVG
NT seq 5895 nt   +upstreamnt  +downstreamnt
ttgtcatccagcaatctgatccgcattcgcggagcacgtcagcacaacctcaagaacctc
gatctcgacctgcgcaccggcgaaatgacggtcgtcacgggcccgtcgggctccggcaag
tcgagtctcgtgttcgacacgctgtatgcggaagggcagcggcgctacgtcgaaaccttc
agcgcgtacgcacgccagttcctcgaccggatggaccgcccgcaggtcgagcgcgtcgac
ggcgtgccgcccgcgatcgcgatcgaccagaccaacccggtccgcagttcgcgttcgacc
gtcggcacgatgaccgagctgaacgatcacctgaagctgctgtacgcgcgcgcggccgag
ctgttcgaccgccagaccgcgcggcaggtgcggcacgacacgccggaaacgatctacgcg
gatctcgtcgctcgcacgcgggcggacgatccgcgcgtcgtcgtcacgttcccggtcgaa
ttgccggaagcggtgtccgacgaggaaatcgcgcagtggctgtccgcgagcggctatacg
cgcgtgcaggcgcagcgcgaagtcgcgtcgcccaccgggccgcgcaagatgctcgacgtg
gtggccgaccgcttccgcgtgcagcaggccgacaaggtgcgcgtggtcgaggcgatcgag
gcgtcgctgaagcgcggcggcggccgcgtgaacgtatacgtgctggcccccgaggccgaa
catgcggtcgccgagccgcaggtgtggcgcttctccaccgggctgcacgatcccgacagc
gacctgcgctacgcggaaccgcaggcggcgctgttctcgttcaactcggcgtacggcgcg
tgcgaaacctgccgcggcttcggccgcgtgatcggcgtcgatctcggcctcgtgattccg
gacgcgcgcaagacgctgcgcggcggcgcgatcaagccgatgcagacccccgcatggaaa
gagtgccaggacgacctgatgcgctacgcggcgaaggccggcatccgccgcgacgtggcg
tggtccgagctgaccgacgccgaacgcgactgggtcgtcaacggttcgccggactggaac
ggcaagtggcagagccagtggtacggcgtgaagcgcttcttcggctatctcgaatcgaaa
gcgtacaagatgcatatccgcgtgctgctgtcgaaataccgcagctacacgccgtgcgac
gtgtgcggcggcgcgcgcctgaagacggaatcgctgcaatggcggctcggctcgaaagag
aatgccgacggcgtgctcgcgccggccgagcgcttcatgccgcgcggcgtcgactggagc
cgcgcgcagctcgaggcgctgccgggcctgaccgtgcacgacctgatgctgctgccgatc
gagcgcatccggcgctttttcgacggcatcagcctgccgagcgcgctgctcgacgatgcg
ctgaagctgctgctcgccgaggtgcgcacgcgcctgaaatacctgtgcgacgtggggctc
ggctacctgacgctcgaccggcagagccgcaccctgtcgggcggcgaggtgcagcggatc
aacctgacgacggcgctcggcacgtcgctgaccaaaaccctgttcgtcctcgacgaaccg
agcatcgggctgcatccgcgcgatctgacacggatcgtcgaggcgatgcagcggctgcgc
gacgcgggcaatacgctggtcgtcgtcgagcacgatccgtcggtgatgctcgcggccgac
cggctgatcgacatggggccgggtccgggcgagcgcggcggcacgatcgtctacgacggc
acgccggccgacatccgttccgcgcccacgctgaccggcgagtatctcggcggccgcaag
caggtcgcgcacgcgtcgaactgggcgcgccgggcggtcgacgcgcatacgccgcgcatc
gtgctcgaaggcgcgagcgaacacaacctgcgcgacgtgacggtcgagattccgctgcag
cggctcgtctgcgtgacgggcgtgtccggttccggcaaatcgacgctgctgcaggacgtg
ctgtatccggcgatggcgcggcaccacggcaaggcgaccgagtcgccgggcgcgtaccgc
agcctcacgggcgcggaccaggtcggcgacgtcgtgttcgtcgaccagtcgccgatcggc
aagaccacgcgctcgaacccggcgagctacgtcggcgcgttcgacgagatccgcaagctg
ttcgcgaaggcgccgctcgcgctgcagcgcggctacggcgccggcacgttcagcttcaac
tcgggagacggtcgttgcccgacctgcggcggctcgggcttcgagcacatcgagatgcag
ttcctgagcgacgtgtacctgcgctgcccggactgcgacggcagccgctaccgcgccgag
atcctcgaggtgcgcatcgaacgcggcggccgtgcgctgaacatcgccgacgtgctcgac
ctgaccgtcagcgaggcggccgcgttcttcgcgaccgacgccgaggtgctgcgcgtgctg
cagccgatcgtcgacgtcggcctcgaatacgtgaagctcggccagccggtgccgacgctg
tcgggcggcgaggcgcagcgcctgaagctcgccggcttcctcgccgaatccgcggcggcg
gccaacgggcgccgggtcgcgacggaagaggcgcgcatcgcgcgcgcgaagctgttcatg
ttcgacgagccgaccaccgggctgcacttcgacgacatcgcgaagctgatgcaggcgttc
ggcaagctgctcgcggccggccattcgctgatcgtgatcgagcacaacctcgacgtgatc
cgcgcggccgactggctgatcgatctcggcccggaaggcggcgacggcggcggcctcgtg
ctgtgcgcgggcacgcccgacgacgtgaaggcctgcgccgaatcgcacacgggcgtcgcg
ctgctgcagtacgaccgcgagatggacgccgaggcggcgctcgccgacgaaggcgtgccg
ctgcaggccgtgctgaacgccgcgcgcgagcgccgtgcgatcgagggcgaggacgtcgtg
cggatcgtcaacgcgcgcgagcacaacctgaaggcgctcgacgtcgacattccgcacggc
aagttcaacgtgatcaccggcgtatcgggctccggcaagtcgacgctcgcgttcgacatc
ctgttccacgaaggccagcgccgctacctcgaatcgctgaacgcgtatgcacgctcgatc
gtgcagccggccgggcggcccgaagtcgacgcggtgtacggcattccgccgaccgtcgcg
atcgagcagcggctgtcgcgcggcgggcgcaagagcacggtcgcgaccacgtccgaagtg
tggcacttcctgcggctgctgtacgtgaagctcggcctgcagcattgcatccacgacggc
acgccggtcacgtcgcaatccgtcgaatcgatcgccgcgcagctgctgcgcgatcatcgc
ggcgagcacgtcggattgctcgcgccgctcgtcgtgaaccgcaagggggtgtacaccgat
ctcgcgaagtgggcgaaggcgcgcggcagcacgcatctgcgtgtcgacggcgagttcgtg
ccggtcgatccgtggccgaagctcgaccgcttccgcgagcacacgatcgaattgccggtc
gccgatctcgtcgtgtcgccggacaacgaagccgaattgcgtcgcaggctcgacgagacg
ctcgagctcggcaagggcgtgatgcacctgctcgcgccgctcgacgggctgcacgacgcg
atgcggaacaaccattcgaccgcgcgcgtcggcacggtcaaggtgctgtcggtcaagcgt
gcgtgcccggtatgcggcacgagctatccggagctggacccgcgaatgttctcgtacaac
agcaagcacggctggtgcacgacctgcgtcggcaccggcgtcacgcttacgcgcgaacaa
cgcgccgcgtacgacgacacggtactcgccgaggacggccgcggccgcgagcagacgctg
ccgtcggacgagcaggaaccggaaggcgtcggcaacgagccgtgcccggactgcggcggg
acgcggctgaacccgaccgctcgcgcggtcacgttcgacgcgcatccgatcgtcgaggtc
gcgcagtggacggtgtcggacacgcgccgctggatcgacgcgctcgaactcaccgggcgc
gacgcgcagatcgcgcgcgacatcgtcagcgagatcggcagccgcctcgcattcctcgag
gaagtcgggctcggttacctgagcctcgaccgtgcggcgcccagcctgtcgggcggcgaa
gcgcagcgcatccggctcgccgcgcagctcggcagcaacctgcagggcgtgtgctacgtg
ctcgacgagccgacgatcggcctgcatccgcgcgacaaccagatcctgctcgacgcgctg
cgcaagctcggcgacaagggcaatacgctcgtcgtcgtcgaacacgacgaggacacgatc
cgtcgcgccgatcacatcatcgacatcggccccggcgccggcaagcgcggcggtgcgcta
gtcgcgcagggcgcggtcgccgatctcgccgcgcaggccgactcggtcacgggtcggctg
ctcgcgcggccgatgacgcatccgctgcagccgcgccgtagcgtgagcctgccgggcaag
aagggcggcgcggccgtgccggaagcgtggctgaccgtgcacggtgcgcggctgcacaac
ctgcgcgacgtcacggtcggcattccgctcgcgcggctcgtcgcggtgacgggtgtcagc
ggctcgggcaagtcgacgctcgcgcgcgacgtgctgatgacgaacctgctcgacgcggtc
ggccgctcggtgctttcgtcgcccgccacacggcgcgcacgcaaggccgcgcagcaggac
gcgccggcggccaaccgccgctcgagcgtgctcgcacgcagcgcgccgcggccgtcgctg
aacgtcacgcacgcgtggcagggctgcgcgtcgctgagcggctgggagcagatcgatcgc
gtgctcgaagtcgaccagacgccgatcggcaagacaccgcgttcgtgtccggccacctac
atcggcgtgtgggacacgatccgcaagctgttcgcggacaccctggaggcgcgtgcgcgc
ggctatacggcgtcccggttctcgttcaataccggcgacgggcgctgcccggcgtgcgaa
ggacaaggcgtgcgcacgatcggcatgagcttcctgcccgacgtgaaggtgccgtgcgac
gtgtgtcacggccagcgtttcaatccggagacgctcgccgtcacgtggcgtggccggaac
atcggcgacgtgctgacgatggagatcgacgaggcggtggaattcttcgcgccgatctcg
aacatcgcgcatccgctgcagctgatgaaggacgtcgggctcggttacctgacgctcggc
cagccgtcaccgacgttgtccggcggcgaggcgcagcgcatcaagctggtcaccgagctg
acgaaggtgcgcgacgacatcacgcggcgtggccagaaggcgccgcatacgctgtacgtg
ctcgacgaaccgacggtcggcctgcacatggcggacgtcgcgaagctgatccgcgtgctg
caccggctcgtcgatgcggggcatagcgtcgtcgtgatcgagcatgatctcgacgtgatc
gcggaagccgactggatcatcgacctcgggccggagggcggtgtgggcggcggcacgatc
gtcgcggcggcgccgcccgaagcgctcgtgaaggtcggcgcgagccatacggggcaggcg
ctcaagccggtgctggcgcgcacgagttcggatgaaggggaagccgagcgcgagggagag
gcgcgcgtcggttga

DBGET integrated database retrieval system