Burkholderia seminalis: WJ12_23630
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Entry
WJ12_23630 CDS
T04851
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bsem
Burkholderia seminalis
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsem03016
]
WJ12_23630
Enzymes [BR:
bsem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WJ12_23630
Transfer RNA biogenesis [BR:
bsem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WJ12_23630
Prokaryotic type
tRNA splicing ligases
WJ12_23630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AOJ29828
LinkDB
All DBs
Position
2:complement(647647..648870)
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AA seq
407 aa
AA seq
DB search
MSNMDYQVMELANGKPVKMWTQGVAIEDEARAQLRNTAQMPFVFRHIAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTASDLPDSLAGLRGAIERAVPHGRAPGRR
DPGAWGDRTPAAVTDSWKSLQPGFQRIVDKYPKLEKTNHYAHLGTLGTGNHFIEVCVDEA
DHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQAMMDAVIAAARGVIAKPFALEEHAVNCHHNYVQRERHFGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTADDQVKAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacatggactatcaggtgatggaactggccaacggcaagccggtgaagatgtgg
acgcaaggcgtcgccatcgaggacgaagcgcgcgcgcagttgcgcaacaccgcgcagatg
ccgttcgtcttccgccacatcgcggtgatgccggacgtccacctcggcaaggggtcgacg
atcggcagcgtgattccgacgaagggcgcgatcatcccggccgcggtcggcgtcgacatc
ggctgcgggatgatggccgcgcgcacgacgctgacggcgtcggatctgccggattcgctc
gcggggctgcgcggcgcgatcgaacgcgcggtaccgcacggccgcgcgcccgggcgccgc
gatccgggcgcgtggggcgatcgcacgccggccgccgtgaccgactcgtggaagtcgctg
cagccgggcttccagcggatcgtcgacaagtatccgaagctggaaaagacgaaccactac
gcgcatctcggcacgctcggcaccggcaatcacttcatcgaagtgtgcgtcgacgaagcg
gaccacgtgtggttcatgctgcacagcggctcgcgcggcgtcggcaatgcgatcggcagc
ctgttcatcgaactcgcgcaggccgacatgcgccagcacatcgcgaacctgccggaccgc
aacctcgcgtatttcaccgaaggcagccggcacttcgacgattacgtcgaggccgtcggc
tgggcgcaggactacgcgcggcgcaaccggcaggcgatgatggacgcggtgatcgcggca
gcacgcggcgtgatcgcgaagccgttcgcgctcgaagaacacgcggtgaactgtcaccac
aactacgtgcagcgcgaacgccacttcggcgaagacgtgctcgtgacgcgcaagggggcg
gtgtccgcgcagaaggggcaactggggatcatcccgggctcgatgggcgcgaaaagcttc
atcgtgcgcgggctcggcaacccggaaagcttctgctcgtgcagccacggcgcgggccgg
acgatgagccgcaccgaagcgaagcgccgcttcacggccgacgaccaggtcaaggccacc
cagggcgtcgaatgccggaaggacgcgggcgtcgtcgacgaaatcccgatggcctacaag
gacatcgacgcggtgatggcggcccagcgcagcctcgtcgaagtggtgcacacgctgcgc
caggtggtgtgcgtgaaaggatag
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