Bacillus subtilis subsp. subtilis 6051-HGW: BSU6051_11820
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Entry
BSU6051_11820 CDS
T02503
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsh
Bacillus subtilis subsp. subtilis 6051-HGW
Pathway
bsh03420
Nucleotide excision repair
bsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSU6051_11820 (yjcD)
03430 Mismatch repair
BSU6051_11820 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsh03400
]
BSU6051_11820 (yjcD)
Enzymes [BR:
bsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSU6051_11820 (yjcD)
DNA repair and recombination proteins [BR:
bsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSU6051_11820 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BSU6051_11820 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_16
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AGG60535
LinkDB
All DBs
Position
complement(1253710..1255863)
Genome browser
AA seq
717 aa
AA seq
DB search
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKT
RVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGTFHSL
FYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFT
YILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAK
TIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVS
DIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIK
KIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKT
IPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETAR
KGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
ttgttacggcttaacatcgccgatccgccagagtttatccatcgccagccaggcgatttt
ccggcatgtgaggaggcgtgcgaaccgaagccctctaaagaggggaaaaaagaagatgat
caggaatctggtgtcattcgtttacccaagggaaaagcgatcgccgctgacccgtcccca
gctgttacagaatggcaccgtcctagaagcattaaaccaggaacaccatttgtgccaaaa
acaatagaacccgatacgagcctttttccgtctgtcggtttaaacacggatcagctgaaa
gctgtcacggaaacagagggcccgctcctcgtgcttgcaggtgcggggagcggaaaaaca
cgggtactgacagcccgtgccgcccacatgatcgaacacttaggcataccgcctgaaaat
atgctgcttgtcacctttacaacaaaagctgtcgctgaaatgaaagagcgtatggcgaac
cagtacggattacagccggcaaaagtcagaagaattgtgacaggaacattccacagtctg
ttttataagatcttgtatcactctaattctgctaaatggaacggtgagcatctgctgaaa
atggagtggcagcgggaacaatatatcaaaaaagcactctatgaagaaggcatcgatgag
aaagaatccccagttgaccaagccctgcagcagatcggtttttggaaaaacacttatgtc
ccaaatgaacgcatccctctaaaagatgagtgggaaaaacaagtttatcgtttatatgaa
cattatgaacgccagaaaaaagaacacagccaatttgattttgatgacatggcttcagcc
tgctatgaattgtttatcgagcggcctgaccttctggaacaatatcaatctcggtttacg
tatatcttaattgatgagtttcaggacattaatccggttcaatacaaaatcatgcaaatg
ctcgccagcccggagcaaaacctgtgctgtgtcggagacgatgaccagtccatctacgcg
tttcgcggaagcaatccgtctttcattcttgattttcaaaaggattatccgggagcgaag
acgatctatttaactgcgaactacaggtctacgcacccgatcgtctctagtgctgatatc
gttgtgaaaaagaacaaaaacagatatgccaaaacgcttgaagcggcccgcgatgacatt
caggtccctgtgctgttttatccttatgatgaagaggaagaagccacaatggtcgtttcc
gatatcaaagaaaaaattcaaaatggagccagtccagaagactttgcggttctttaccgc
acaaacagcggaggccgtgctatatatgaaaggcttcatcaatcgtcaattccgtataca
gctgaccgcggcgtccaatcgttttacagcagacggatcgtccgccagattctcgcctac
ttgtacgccagccaaaatgaggatgacaccgaggcgattaaacacttgcttcccgccttg
tttttaaaacagtccgctttgaatacgctgaaggcgctctcgattacagaggactgtacc
atgatcaaagcgctggccaaattgcctgatctgaagccattccagctggacaaaatcaag
aaaatcgtaccgttttttgcaagcctccgcacaatgaaacccgtagaagccatcaccttt
gcagaaggaaaaatgggcttctccgagtatttaaaaaagcggggcaatgagggcaacaag
ctggaaaaaggctctgatgacctgcgcgacatcaaggttgtcgccaagaagttcaaaacg
attcctgactttcttgcccacgtagaccatatgagggccgctgagaaaaacagaacggat
gaacatggcgttcagctgatgaccattcaccggtcaaaaggccttgaattcaaaacagtc
tacgtgttaggcactgtagatggctcgattccgcacgatttctcattagaaacggcaaga
aaaggagacgaggccgctcttgaggaggaaagacgccttttatatgtagccatgacccgg
gcgaaacagcatttatatttgtcttgccctgctaacaggcgcggcaaaacagccaaccgc
tcaagatttttgtatcccctgctacagaaagcaagacagcccttgcatcattaa
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