Bacteroides thetaiotaomicron VPI-5482: BT_3844
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Entry
BT_3844 CDS
T00122
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BT_3844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bth03019
]
BT_3844
03400 DNA repair and recombination proteins [BR:
bth03400
]
BT_3844
Enzymes [BR:
bth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BT_3844
Messenger RNA biogenesis [BR:
bth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BT_3844
DNA repair and recombination proteins [BR:
bth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BT_3844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
HTH_40
Fmp27_WPPW
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AAO78949
UniProt:
Q8A127
LinkDB
All DBs
Position
4999740..5001920
Genome browser
AA seq
726 aa
AA seq
DB search
MAGKINLTDELKKYFGFNKFKGNQEAIIQNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEG
TAIVISPLIALMKNQVDAMRNFSEEDGIAHFINSSLNKGAIDQVRSDILAGKTKLLYVAP
ESLTKEENVDFLRSVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTAT
ATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTNNIDKDIIKFIKNNSEKSGIIY
CLSRKKVEELAEILQANGINARPYHAGMDSMTRTKNQDDFLMEKVEVIVATIAFGMGIDK
PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCLTFYTNKDLQKLEKFMQGKPVAEQEI
GKQLLLETAAYAESSVCRRKTLLHYFGEEYTEENCGNCDNCLNPKKQVEAQELLCAVIEA
IIAVKENFKADYIIDILQGRETSEVQAHLHEDLEVFGSGMGEEDKTWNAVIRQALIGGYL
SKDVENYGLLKVTEEGHKFLKKPKSFKITEDNDFEETEEEVPARGGGSCAVDPALYSMLK
DLRKKLSKKLEVPPYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIK
RHCEENEIERPEDLRVRTVANKSKMKVAIIQAIDRKVALDDIALSKGIEFGELLDEVEAI
VYSGTKLNIDYFLEEIMDEDHMLDIYDYFKESTTDKIDDALDELGDEFTEEEVRLVRIKF
ISEMAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaagattaatttaacagatgaactgaaaaagtatttcggatttaataagttc
aagggaaaccaggaagcaatcattcagaacttgcttgatggtaaagatacctttgtgcta
atgcctaccggtggcggaaaatctttatgctatcagttaccttcgctcttgatggaaggt
acggcaattgttatttctccgctcattgcgttgatgaagaatcaggtggatgcaatgcgt
aatttcagtgaagaggatggcatcgcccattttataaattcttcattaaataaaggcgca
atagaccaagtaaggtctgacatccttgccggaaaaacaaaattgctatatgtggctcct
gagtcattgacaaaggaagaaaacgtagattttttgcgttcggtgaaaatttcgttctat
gcggtagacgaagctcattgtatttccgaatgggggcatgacttccgtccggagtatcgg
cgaattcgtccgatcattaacgaaatagggaaagctcccttgattgcgcttactgcaaca
gcaacaccgaaggtacagcacgatatccagaaaaatctggggatggtggatgcacaggtt
ttcaaatcctcgttcaaccgtccgaatctttattatgaggtacgcgcaaagaccaataat
attgataaagatattatcaagttcatcaagaacaattcggaaaagtcgggcattatctat
tgcctgagccggaagaaagtagaggaacttgctgaaattcttcaggcaaacggaataaac
gcgcgtccttatcatgcaggtatggactcaatgacgagaacgaaaaaccaggatgatttc
ctgatggaaaaggtggaagtgattgtggctaccatcgcttttggtatgggaattgacaag
ccggatgtacggtttgtgatccattatgatatcccgaagagtctggaagggtattatcag
gagacaggacgtgccggcagagacggcggcgaaggccagtgcctgaccttttatacaaac
aaagacttgcagaaactggaaaagttcatgcaaggaaaacctgtggcagaacaggaaatt
ggcaagcagcttctgttggaaaccgctgcttatgccgaatcttccgtgtgtcggcgtaag
acattgctgcactatttcggtgaagaatatacggaagaaaattgtggaaattgtgacaac
tgtttaaaccctaaaaaacaagtggaggctcaagagttattatgtgccgtgattgaagcg
attatcgcggtgaaagaaaattttaaggcagattatatcatagacatactacaaggtaga
gaaacgtcggaagtacaggctcacctacacgaagatctcgaagtgttcggttcgggtatg
ggagaagaagacaaaacatggaatgcagtgatccgacaagctttgattggcggttacttg
agcaaagatgtggagaattatggtctcctgaaagtgacggaagaagggcataagttcctg
aagaagccaaaatcgttcaagattactgaagataatgattttgaagaaacggaagaagaa
gtacctgcacgtggcggtggctcttgtgcggtagacccggctctttattcaatgctgaag
gacctacggaagaagctgtccaagaaactggaagttcctccttatgtcattttccaggat
ccgtctttggaagcgatggctaccatctatccggtgacattggatgaactgcagaatatt
ccgggcgtaggtgccggaaaggcgaaacgctatggtgaagagttctgtaagctgatcaaa
cgtcattgcgaagagaatgaaatcgaacgtccggaagatttacgtgtacgtacggttgcc
aataaatcaaagatgaaagtggctattattcaggctatcgaccgtaaagtggcgctggac
gatatcgctctttccaaaggaatcgagtttggtgaactgctggatgaagtggaagcaatc
gtttactccggaactaaactgaatatcgactacttcctggaagaaattatggatgaagat
catatgctcgatatctatgattacttcaaggaatctacgacagacaagattgatgatgct
cttgacgaactgggcgatgaatttaccgaagaggaagtccgactggtgagaatcaagttc
atctctgaaatggctaattaa
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