Burkholderia thailandensis E254: BTN_5402
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Entry
BTN_5402 CDS
T03380
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bthe
Burkholderia thailandensis E254
Pathway
bthe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bthe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BTN_5402 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bthe03021
]
BTN_5402 (rpoD)
Transcription machinery [BR:
bthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BTN_5402 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
KIND
Motif
Other DBs
NCBI-ProteinID:
AIT22730
LinkDB
All DBs
Position
2:2529847..2531889
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AA seq
680 aa
AA seq
DB search
MTKKLNEVSVDDDANQSDEQPTAASGKGEKAKARDRRAKEKALLKEAFATSTPGTAEELE
ERRTKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLIDPNAADTDGFSEK
DAEEIENEDEEAEEDDEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHIVVDK
CGMPRSEFIARFPGSETDLDWAEKVAAEGHSYGAILSRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaacgaagtatccgtcgatgacgacgcaaaccagagcgacgaacag
cctaccgctgcgtcgggcaaaggcgaaaaggccaaggcgcgcgatcgccgcgccaaggaa
aaggcgctgctgaaggaagcgttcgcgacgagcacgcccggcacggccgaggagctcgaa
gagcgccgtacgaagctgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacg
tacgccgaaatcaacgaccatctgccggacaacttcacggaaacggaagcgctcgaaggc
atcatcggcacgttcaacgacatgggcgtcgcggtgtacgagcaggcgcccgacgccgag
acgctgctgttgaacgacaacgcgcctgccgcgtcgtccgacgatgaagtcgaagaggaa
gcggaagtcgcgctgtcgaccgtcgattccgaattcggccgcacgaccgatccggtccgg
atgtacatgcgcgagatgggcacggtcgagctgctcacgcgcgagggcgaaatcgagatc
gcgaagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcgtgcccgacg
acgatcgccgacatcctcgcgatggccgagcgcgtcgcgaacgaggagattcgcgtcgac
gagctcgtcgacggcctgatcgatccgaacgccgccgataccgacggcttctcggagaag
gacgccgaggaaatcgagaacgaggacgaggaagccgaagaggacgacgaagaggaagaa
gaggacgacgacggcgccgcgcaagcgaccgccaatgcggctcagctcgaagcgctgaag
cgcgcgtcgctcgagaagttcgcgctgatcagcgaatggttcgacaagatgcgccgcgcg
ttcgagaaggaaggctacaagtcgaagtcgtacctgaaggcgcaggaaacgatccagaac
gagctgatgtcgatccgcttcaccgcgcgcaccgtcgagcgtctgtgcgacacgttgcgc
gcgcaggtcgacgaagtgcgtcaggtcgagcgtcagattctgcacatcgtcgtcgacaag
tgcgggatgccgcgctcggaattcatcgcgcgcttcccgggcagcgagaccgatctcgac
tgggcagagaaggtcgcggccgaaggccattcgtacggcgcgatcctgtcgcgcaacatc
ccggcgatccgcgagcagcagcagcgtctgctcgacttgcaggcgcgcgtcgtgctgccg
ctgaaggacctgaaggaaaccaaccgccagatggcggcgggcgaactgaaggcgcgccag
gcgaagcgcgagatgaccgaggcgaacctgcgtctcgtgatctcgatcgcgaagaagtac
acgaaccgcggcctgcagttcctcgatctgatccaggaaggcaacatcggcctgatgaag
gccgtggacaagttcgaataccgtcgtggctacaaattctcgacctacgcgacgtggtgg
atccgccaggccatcacgcgctcgatcgcggaccaggcgcgcacgatccgtattccggtt
cacatgatcgagacgatcaacaagatgaaccgcatctcgcggcagatcctgcaggaaacc
ggcctcgagccggacccggctacgcttgccgagaagatggagatgccggaagacaagatc
cgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatcggcgacgac
gacgattcccatctcggcgacttcatcgaggacaccaacacggtcgcgccggcggatgcc
gcgctgcatgcgagcatgcgcgacgtcgtgaaggacgtgctcgattcgctgacgccgcgc
gaggcgaaggtgctgcggatgcgctttggtatcgaaatgagcaccgatcacacgctcgag
gaagtcggcaagcagttcgacgtcacccgcgagcggattcgtcagatcgaggcgaaggcg
ctgcgcaagctgcgtcatcctagccgttcggacaagctgaagtcgttcctcgaggggaac
tga
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integrated database retrieval system
