Bibersteinia trehalosi USDA-ARS-USMARC-190: F544_2130
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Entry
F544_2130 CDS
T03019
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
btra
Bibersteinia trehalosi USDA-ARS-USMARC-190
Pathway
btra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
btra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F544_2130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btra03400
]
F544_2130
Enzymes [BR:
btra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F544_2130
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F544_2130
DNA repair and recombination proteins [BR:
btra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F544_2130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
HscB_4_cys
Zn_Tnp_IS91
HypA
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AHG85447
UniProt:
W0R4Q3
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All DBs
Position
208373..209197
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AA seq
274 aa
AA seq
DB search
MPELPEVETSVRGVTPYLVGQTIKQVVIRQPKLRWQVSPELAAMQGATITHIDRRAKYLI
IRTDKGDIIVHLGMSGSLGILTQQNDLGAEKHDHIDLVTQNGTILRYNDPRKFGAWLWAK
NAEELEIIQRLGVEPLSDNFDGEHLYQLSRNKTVAVKNFIMNNAVVVGVGNIYASESLFM
AGIHPELAAQNLTKKQCARLATVIKEVLTKSIIQGGTTLKDFIQPDGKPGYFAQVLQVYG
RKGEECRDCGSEIQAKVIGQRNSFFCPKCQKLPR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaaacgagtgtccgtggtgtcaccccatatcttgttggg
cagacaattaagcaggtggtgattcgccagcctaagctacgttggcaagtcagccctgaa
ttagctgcaatgcagggggcaacaattacccatattgatcggcgcgcaaaatacttaatt
attcgcaccgataagggagatatcattgtgcatttaggtatgtcaggatcgctaggcatt
ttaacgcagcaaaacgatctaggcgcagagaaacatgatcatattgatctggttacccaa
aatggcactatcttgcgctataacgatccaagaaaatttggggcttggctttgggcgaaa
aacgcagaagagttagagattattcagcgattgggggttgagccgctttccgataacttt
gatggcgagcatctctatcaacttagtcgcaataaaacggtcgcagttaaaaatttcatt
atgaataatgcggtagttgttggtgtgggaaatatctacgccagcgagagtttatttatg
gcagggattcaccctgaacttgctgcgcaaaatcttactaaaaaacagtgtgcgaggttg
gcgactgtaatcaaagaagtactgacaaaatctattattcaaggcggtacaacgctaaaa
gattttatccaacctgatggcaaaccgggctattttgcccaagtcttgcaagtgtatgga
cgaaaaggtgaggaatgccgagattgtggtagtgaaattcaggctaaagttatcgggcaa
cgaaatagctttttctgccctaaatgccaaaagctgcctcgctga
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