KEGG   Burkholderia sp. PAMC 28687: AX768_07915Help
Entry
AX768_07915       CDS       T05699                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bui  Burkholderia sp. PAMC 28687
Pathway
bui03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bui00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AX768_07915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bui03400]
    AX768_07915
Enzymes [BR:bui01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AX768_07915
DNA repair and recombination proteins [BR:bui03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AX768_07915
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AMM14041
UniProt: A0A126YK43
LinkDB All DBs
Position
1:complement(1729029..1731854)
Genome map
AA seq 941 aa AA seqDB search
MAGKLETYQRMRRFNQTPEPSGDAAEKAKARRASKKAQASELSFVIQEHDARRLHYDFRL
ELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIDYGSFEGAIPEGNYGAGSVIVWDRGTW
EPQSGSIDEARATYEKGKLKFVLHGDKLQGGWTLVRSHMRGNGDKEQWLLIKERDDEARN
EADYDVLLKKPGSVMSDSLGARTKSGEVRERAERKSAAKTTKAAPSPKRPAVKDKGTSPE
RPRPDIVANRSAESLRTLADNPAIQDAVKAKLPATMKPQLATLVDASPSSDDWTYEIKFD
GYRIMIRIDREGGAKPKAAQAQFFTRNGHDWTDKFSRQVKALDKLDVQNAWLDGEAVVLD
DNDLPNFQKLQNAFDTNRPQDIAIYFFDIPFLNGYDLRNVPLIQRRAILQALLEPLDDDV
LRFSADFEFGADDLLKSACDMALEGIIGKRRDSTYTSGRSNSWIKLKCRRRQEFVVGGYS
EPTGSRGEFGALLLGVYDAKGKLQYAGRVGSGFNAGTLRDIKKQLDKREIQKMPFASAPK
ERSRTPVHWVTPELVAECNFAEWTSERIVRQASFVSLRTDKPAKEIVREEPKLTKEVALN
DENEVAAAPAKKSAAKSVSKTNAVAKKAPAKKAPPKKAAAKKTAGAELVAGVKISHPERV
LDPSTGVSKLDLALYYEAVAPWMLPHLKDRPVSLVRAPGDIGGELFFQKHSEKLTIPNVK
QHPGIDPGHPALITIENVGALVGAAQMGTIEMHTWNALAAKLEKPDRMVFDLDPGEGLGW
DRMKEAARLTRELLEELGLASFCKTSGGKGLHVVVPLTPQAGWDEVKGFSQAVAQHMAGA
LPKYFSAKMGKQNRQDKIFVDYLRNNRGSSTVAAYSLRARPGMGASVPIGWDELDATTAG
DQWNIGNLHERLDELDADPWAEYWKTKQRISAAMKKRLDIK
NT seq 2826 nt NT seq  +upstreamnt  +downstreamnt
atggctggaaaactcgaaacctatcagcgcatgcggcgtttcaaccagacgccggaacct
tccggcgacgctgctgaaaaagctaaagcccgacgcgcatcgaaaaaggcgcaggcgagc
gagctttcgttcgtcattcaggagcacgacgcacgccggcttcactacgacttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaggggccgagcctggatccatcg
gttaaacggcttgccgtgcatgtcgaggaccatccgatcgattacggttcgttcgaaggc
gcgatccccgaaggcaattacggcgcgggcagcgtaatcgtctgggatcgcgggacgtgg
gagccgcaaagcgggagtatcgatgaagcgcgcgccacgtatgaaaagggcaagctcaag
ttcgtgcttcatggcgacaagctgcagggcggctggacgctcgtgcgcagccatatgcgc
ggcaatggcgacaaagaacagtggttgctgatcaaggaacgcgacgacgaagcccgcaac
gaagccgactacgacgttttgctcaagaagcccggcagtgtgatgagcgattcgcttggc
gcgcgcacgaaaagcggtgaggtgcgcgagcgcgccgagcgcaagagcgcagcgaagacg
acgaaagcggcgccatccccaaagcggcctgccgtcaaggacaagggaacgagtcccgag
cggccgcggccggacatcgtcgcgaaccgcagcgctgaatcgctgcgcaccctcgccgat
aaccccgccatccaggacgcggtcaaggcgaaactccccgccaccatgaaaccgcaactt
gcgacgctcgtggacgcgtcgccttcgagcgatgactggacgtacgagatcaagttcgat
ggatatcggatcatgatccgcatagaccgcgagggcggtgcaaagccaaaggcagcgcaa
gcgcaattctttacgcgcaacggccacgactggaccgacaagttcagccgtcaggtcaag
gcgctcgacaagctcgatgtacagaacgcatggcttgacggcgaagccgtcgtgctggac
gacaacgatctgccgaatttccagaagctgcagaacgccttcgatacaaaccgtccgcaa
gacatcgcgatctatttcttcgatatcccttttctgaatggttacgacctgcgcaacgtg
ccgctgatccagcgccgggcgatcctgcaagcgctactggaaccgctggacgacgacgta
ctgcgcttttcggcggacttcgaattcggcgcggacgatctgttgaaaagtgcgtgcgac
atggcgctggaaggaatcatcggcaagcgtcgcgacagcacttatacgtctgggcgcagc
aatagctggatcaagctgaaatgcaggcggcggcaggagttcgtggtcggcggatactcg
gagcctactggcagccgtggcgagttcggcgccttgctgcttggcgtctacgatgcaaaa
ggcaagctgcaatacgctggccgcgtgggcagcggcttcaatgccggaaccctgcgcgat
atcaagaagcaactcgataaacgcgagattcaaaagatgccgtttgcgtcggcgccaaaa
gagcgcagccgtacgccggtgcattgggtcacgccggagctcgtcgccgagtgcaacttt
gccgagtggacgtctgagcggattgtccggcaggcatcgttcgtcagtttgagaaccgat
aaacccgcgaaagagatcgtgagggaagagccgaaattgacgaaggaggtcgcattgaac
gacgaaaacgaagtcgcagcggcgcccgcgaaaaaatcggcggcgaagtcggtgagcaaa
accaatgccgtcgccaagaaagccccagccaagaaagccccgcccaagaaagccgccgcg
aaaaaaaccgccggcgctgaactggttgccggcgtgaagatcagccatccggagcgcgtg
ctcgatccatcgacgggtgtcagcaagctcgaccttgccctttactacgaagccgtggcg
ccctggatgctgccgcatctgaaggaccgtcccgtgtcgctggttcgagcaccaggggat
atcggcggggagctgttttttcaaaagcacagcgaaaaactcacgatcccgaacgtgaaa
cagcatccgggtatcgatcctggacacccggcgctcatcacgatagaaaacgtcggcgcg
ctcgtcggcgcggcgcagatgggcaccattgaaatgcacacgtggaacgcgcttgcggcg
aagctggagaaacctgaccgcatggtcttcgacctcgatcccggcgaaggactcggctgg
gaccgcatgaaggaagccgcgcgtctcacgcgcgaactgctggaagaactcggccttgcc
tccttttgcaagacgagcggcggcaagggcttgcacgtagtcgtaccgctcacgccgcaa
gccggatgggatgaagtgaagggtttctcgcaagccgtcgcgcagcacatggccggcgcg
ttgccaaaatatttctcggcgaagatgggcaagcagaatcgtcaggacaagatcttcgtc
gattacctgcgcaataaccgcggctcaagcacggtcgccgcatactcattgcgcgcacgg
ccgggaatgggggcgtcggtgccgatcggctgggatgaactcgatgccaccacggccggc
gatcaatggaacatcggcaatctgcatgagcggctggacgaactcgacgccgatccatgg
gccgagtactggaagacgaaacaacgcatctccgctgccatgaaaaagcggctcgatatc
aaataa

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