Stenotrophomonas maltophilia JV3: BurJV3_2695
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Entry
BurJV3_2695 CDS
T01596
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BurJV3_2695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buj03019
]
BurJV3_2695
03009 Ribosome biogenesis [BR:
buj03009
]
BurJV3_2695
Enzymes [BR:
buj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BurJV3_2695
Messenger RNA biogenesis [BR:
buj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BurJV3_2695
Ribosome biogenesis [BR:
buj03009
]
Prokaryotic type
rRNA processing factors
BurJV3_2695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
SE
Motif
Other DBs
NCBI-ProteinID:
AEM52015
LinkDB
All DBs
Position
2966137..2969436
Genome browser
AA seq
1099 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAR
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LANALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRNALREIEQRHEAPIVIVADEQLHTPH
YAVTRLRENELGEESSKPSYQRGTPRKLPVHALTKGQLNIPPPAVTQVKHTSPAPVREEA
APAAAAPAPVVAAPVAPAPSGGVIGWLKRVFGGEPAPAPAPAAPVARQQQDGGRKDRNKD
RNKDRKERRDDNRGNGGNGNAQQQKDGGNRKDRGEQRKDGRNGNNGNAQQQPQQGKQKEP
QQKDGQPQQQNKPRNEQQGHGQNQNQQQPKLKQPKQPRQQQDGDKPAEKPQRSAAEAPAE
AVTAAAAVAATAVAANVVTAQEATAPVAPVAPVAAASPEAAAPADTTAIAGNEAEAIAVT
GEEAALDANGEQAGEGATRRRRGRRGGRRRRRGGAENAAGNDGLGDDQDDADDSDDTDVA
DVAEPSNDNAAGATPVAAAQPARSQPEFDFDDEAEPAAAEAEKPVRAAAAVVAAPVAVVS
SAVVDAPAPVVAEVQAPVETVAKAEPASSPVQTSMLDAIDAATPAQPAVAAAPAVEAKPV
VVEVAPVAEATPVVDTPVVEVKPVVAEAAPIVESKPQVVEAAPVVETQPLAVEAAPVLEA
APAVEAKPVVETAPVAEQPVAPVAVEAAPVEAAAPVAEAVVTPSIDPVADGHADAAAQAA
EAKAEEEDEDAAKRTPPAN
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggctgaagagctgcgtgttgccatcgtggat
ggccagtcgttgtatgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagccgccttcgtcgagtac
ggcggtggccgccatggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggtgtcgaccacaacaaggccggcatccgcgagctgctgaaggaaggccaggagatcgtc
gtccaggtggacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggtgtctcccgt
cgcatcgagggcgaagaccgggccgcgctgaaggacgccctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgtaccgccggcgtcggccgcgatgcggaagagctgcag
tgggacctggactacctgctcaacgtctggcgcgccatcgccgaagccgcgctgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtggacaccgaggagatgtacgagcacgcccgc
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcactacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggtgcctacgagcgcaat
gtacgcctgccgtcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtcgtgatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctggccaacgcgctgaagtacgaccgcgcccgcgtccaggtcggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgcccgagcctgggtgaatccagccagatc
gtctgcccgcgctgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccgggcaggtgctggtccag
gcgccggtggagatcgccaactacctgttgaacgagaagcgcaacgccctgcgcgagatc
gagcagcgccacgaagcgccgatcgtgatcgtcgccgacgagcagctgcacaccccgcac
tatgccgtcacccgcctgcgtgagaacgagctgggtgaagagagcagcaagcccagctac
cagcgcggcaccccgcgcaagctgccggtgcacgccctgaccaagggccagctgaacatc
ccgccgccggcagtgacccaggtcaagcacacctctcccgccccggtgcgcgaggaagcc
gctccggctgcagccgctccggctccggtcgtggcagcgccagtggcgccggctccgagt
ggcggcgtgatcggttggctcaagcgcgtgttcggtggcgaaccggcgccggcaccggca
ccggcggcccctgtcgcccgccagcagcaggacggcggccgcaaggaccgcaacaaggat
cgcaacaaggaccgcaaggagcgccgcgacgacaaccgcggcaacggcggcaacggcaat
gcgcagcagcagaaggacggcggcaaccgcaaggaccgtggtgagcagcgcaaggacggc
cgcaacggcaacaacggcaatgcccagcagcagccgcagcagggcaagcagaaggagccg
cagcagaaggacggccagccgcagcagcagaacaagccgcgcaacgagcagcagggccat
ggccagaaccagaaccagcagcagccgaagctgaagcagcccaagcagccgcgccagcag
caggacggtgacaagccggccgagaagccgcagcgcagcgccgccgaggcaccggccgag
gccgtgaccgcggctgccgccgtggccgccacggcggtcgccgccaacgtggtgaccgct
caggaagcaaccgcgccggtggcgccggttgcaccggttgctgccgcttcacctgaggcc
gctgcaccggccgataccactgccatcgccggcaacgaggccgaggcgattgccgtgacc
ggtgaagaggctgccctcgacgccaacggcgagcaggccggtgaaggcgcgacccgccgc
cgccgtggccgtcgtggtggtcgtcgccgtcgtcgcggtggcgccgagaacgctgccggc
aacgacggcctgggcgatgaccaggacgacgcggacgacagtgatgacaccgatgttgct
gatgtcgccgagccgagcaacgacaacgctgccggggccactccggtcgctgctgcgcag
ccggcccgttcgcagccggaattcgatttcgatgacgaagccgaaccggccgctgccgaa
gccgagaagccggtccgcgccgccgccgctgttgtcgccgcaccggtcgcggtggtgagc
agcgccgtggtcgatgcccctgcgccggtcgtggccgaggtacaggctccggtcgaaacc
gtggccaaggccgaaccggcgtcgtcgccggtgcagaccagcatgctcgatgccatcgac
gctgcgactccggcccagccggcggtagcggcagctccggcagtcgaagcgaagccggtg
gtggttgaggttgccccggtcgctgaagccactccggtagtcgacactccggtagtcgaa
gtgaagccggtcgtggccgaggccgcaccgatcgtggaatcgaagccgcaggttgttgaa
gcggccccggtggttgaaacccagccgctggccgttgaggccgccccggtgctggaggcc
gctcccgcggttgaagccaagccggtcgtcgagaccgcgccggtcgccgaacagccggtc
gctccggtggcggtcgaagctgcgccggtggaagccgcggccccggtcgccgaggcggtg
gtgacgccgtcgatcgatccggtcgccgatggccacgccgacgccgccgcgcaggccgcc
gaagccaaggccgaggaagaagacgaagacgccgccaagcgcacgccgccggcgaactga
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