Burkholderia sp. PAMC 26561: AXG89_30515
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Entry
AXG89_30515 CDS
T05481
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXG89_30515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bum03400
]
AXG89_30515
Enzymes [BR:
bum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXG89_30515
DNA repair and recombination proteins [BR:
bum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXG89_30515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AME28181
UniProt:
A0A125SHK8
LinkDB
All DBs
Position
unnamed3:complement(126783..128753)
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AA seq
656 aa
AA seq
DB search
MPGRWSTTQKRERPVANDPPGSMPSIIEPELATLANRPPASGDWSYEIKYDGYRMLIRIE
GGSAKLFTRNGHDWTDRMPKLRAAVESLPVENAWLDGEAVVLNASGMPDFNALQNAFDRR
STAKIIIFLFDILWLNGEDVRSEPLRARRQLLHDLLEEVHNPLIRYSADFAEDPQSLVAS
ACKMNLEGIIGKRGDAPYRSGRSNNWVKLKCNLRQEFVIAGISRNKGAKSGVRSLLLGVY
DSSGVLHYAGNVAPSVKASRNDAISKRIEPLKQKKAAFAVAPEPDQDRDYIWLKPELVCE
VSFLEWTPSGEIRHAVFYAMREDKPARAVVKEQGAVIPGEEVAPDDVRSSRERAGPRGAV
FIADIKVTNPTRIVDGTSGKTKVELARYYDDISEWALPYLHNRPLTLVRAPDGINGELFF
QKHSERVRIPGVEELPVELHPRHPPLLVANNAESLVGLAQMSVVELHSWNAVAPDLTHPD
RVIFDLDPDPSLPWSAMLDAASLTKLVLDEIGLKSFAKTSGGKGFHIVVPLTRKQSWAEV
KGFSQALAQHMAKVLPDHFSAVLGPRNRVGKIFIDYLRNSRGASTVAPFSVRARPGLAVS
MPIAWDELKDVTGGDQWSMSSALARQRSLNADPWEGYWKTRQGITVAMRRAIGMQR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgccaggacgatggagcacgacgcaaaagcgcgaacgcccggtcgcaaacgatccgccc
ggctcgatgccttcaatcatcgaacctgagctcgctacgctggcgaatcgtccgcctgcg
tccggcgactggtcgtacgaaatcaagtacgacggttacaggatgctgatccgcatcgaa
ggcggttccgccaaactcttcacccggaacggacacgactggaccgatcggatgccgaag
ctacgggcggcggttgaatcgcttcctgttgaaaacgcgtggctcgatggagaggcggta
gtgctgaacgcgagcggaatgccagacttcaatgcgctgcaaaacgcgttcgaccggaga
agcaccgccaaaatcattattttcctcttcgacatcctttggctcaatggggaagatgtc
cgcagcgagcccttgcgcgcaaggcgccagttactccacgacctgctcgaagaggttcac
aatccgcttatacgatactccgcggacttcgctgaggacccgcagtctctggtcgcatcc
gcttgcaaaatgaaccttgaaggaatcattggcaagcgcggtgatgcgccgtatcgctct
ggacgctcaaacaactgggtcaaactcaaatgcaatcttcgccaggagtttgtgatcgct
ggcatctcgcgcaacaagggtgcgaaatccggggtccgctcgcttctgctgggtgtctat
gattccagtggcgtactgcactacgcaggcaacgtcgcgccttcagtcaaagcatcgcgt
aacgacgcaatctcgaagcgtatcgagccgttaaaacagaaaaaggccgcgtttgccgtt
gctcccgagcctgaccaggaccgtgactacatatggttgaaacccgagctcgtatgcgaa
gtatcgttcctggaatggacaccgagcggcgagatccggcacgcagttttctatgcaatg
cgcgaggacaaacctgctcgcgcagtcgtgaaagagcagggcgcggtgatacccggcgaa
gaagtagctcccgacgacgtgagatcgtctcgagagcgggcggggccgagaggagccgtc
ttcatcgcggatatcaaagtaacgaacccgacccggattgtcgacggcacgtccggcaaa
acaaaggtcgagctggcgcgctactacgacgacatctcagagtgggcgctaccctatctt
cacaaccggccactcacattggtacgggcgcccgacggcatcaatggcgagctgttcttc
caaaagcattcggagcgcgtgcgcataccgggtgtcgaagaacttccggtcgagctccat
cctcgccatccgccgttgctcgttgcaaacaatgcagaatcgcttgtgggactcgctcaa
atgagcgtcgtcgagctgcattcttggaacgccgtcgcaccagacctaacccatccggat
cgcgtcatcttcgatctggatcctgacccgtcgctgccctggtcggcgatgctcgacgcc
gcctcgctcaccaagctcgtgcttgacgagatcggactcaagtcgttcgccaagacgagc
ggcggcaaagggtttcatattgtcgttccgctcacacgtaagcagagctgggcggaagtt
aaggggttctcgcaagcgcttgcgcaacacatggcgaaggtcttgcccgatcacttctca
gcagtcttggggccgcgaaaccgggttggcaaaatcttcatcgactatctgcgaaacagc
cgcggggcaagtacggttgcgccgttctctgttcgcgcgcggcccggtctggcggtgtcg
atgcccattgcctgggacgagttaaaagacgtcactggtggcgatcaatggtcgatgagc
tcagcacttgcccggcaacgctcgctcaacgcggacccttgggaaggttattggaaaacc
cgtcagggcatcacggtagcgatgcgccgcgccatcggcatgcagcgttga
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