KEGG   Burkholderia sp. PAMC 26561: AXG89_30515
Entry
AXG89_30515       CDS       T05481                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bum  Burkholderia sp. PAMC 26561
Pathway
bum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AXG89_30515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bum03400]
    AXG89_30515
Enzymes [BR:bum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AXG89_30515
DNA repair and recombination proteins [BR:bum03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AXG89_30515
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AME28181
UniProt: A0A125SHK8
LinkDB
Position
unnamed3:complement(126783..128753)
AA seq 656 aa
MPGRWSTTQKRERPVANDPPGSMPSIIEPELATLANRPPASGDWSYEIKYDGYRMLIRIE
GGSAKLFTRNGHDWTDRMPKLRAAVESLPVENAWLDGEAVVLNASGMPDFNALQNAFDRR
STAKIIIFLFDILWLNGEDVRSEPLRARRQLLHDLLEEVHNPLIRYSADFAEDPQSLVAS
ACKMNLEGIIGKRGDAPYRSGRSNNWVKLKCNLRQEFVIAGISRNKGAKSGVRSLLLGVY
DSSGVLHYAGNVAPSVKASRNDAISKRIEPLKQKKAAFAVAPEPDQDRDYIWLKPELVCE
VSFLEWTPSGEIRHAVFYAMREDKPARAVVKEQGAVIPGEEVAPDDVRSSRERAGPRGAV
FIADIKVTNPTRIVDGTSGKTKVELARYYDDISEWALPYLHNRPLTLVRAPDGINGELFF
QKHSERVRIPGVEELPVELHPRHPPLLVANNAESLVGLAQMSVVELHSWNAVAPDLTHPD
RVIFDLDPDPSLPWSAMLDAASLTKLVLDEIGLKSFAKTSGGKGFHIVVPLTRKQSWAEV
KGFSQALAQHMAKVLPDHFSAVLGPRNRVGKIFIDYLRNSRGASTVAPFSVRARPGLAVS
MPIAWDELKDVTGGDQWSMSSALARQRSLNADPWEGYWKTRQGITVAMRRAIGMQR
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgccaggacgatggagcacgacgcaaaagcgcgaacgcccggtcgcaaacgatccgccc
ggctcgatgccttcaatcatcgaacctgagctcgctacgctggcgaatcgtccgcctgcg
tccggcgactggtcgtacgaaatcaagtacgacggttacaggatgctgatccgcatcgaa
ggcggttccgccaaactcttcacccggaacggacacgactggaccgatcggatgccgaag
ctacgggcggcggttgaatcgcttcctgttgaaaacgcgtggctcgatggagaggcggta
gtgctgaacgcgagcggaatgccagacttcaatgcgctgcaaaacgcgttcgaccggaga
agcaccgccaaaatcattattttcctcttcgacatcctttggctcaatggggaagatgtc
cgcagcgagcccttgcgcgcaaggcgccagttactccacgacctgctcgaagaggttcac
aatccgcttatacgatactccgcggacttcgctgaggacccgcagtctctggtcgcatcc
gcttgcaaaatgaaccttgaaggaatcattggcaagcgcggtgatgcgccgtatcgctct
ggacgctcaaacaactgggtcaaactcaaatgcaatcttcgccaggagtttgtgatcgct
ggcatctcgcgcaacaagggtgcgaaatccggggtccgctcgcttctgctgggtgtctat
gattccagtggcgtactgcactacgcaggcaacgtcgcgccttcagtcaaagcatcgcgt
aacgacgcaatctcgaagcgtatcgagccgttaaaacagaaaaaggccgcgtttgccgtt
gctcccgagcctgaccaggaccgtgactacatatggttgaaacccgagctcgtatgcgaa
gtatcgttcctggaatggacaccgagcggcgagatccggcacgcagttttctatgcaatg
cgcgaggacaaacctgctcgcgcagtcgtgaaagagcagggcgcggtgatacccggcgaa
gaagtagctcccgacgacgtgagatcgtctcgagagcgggcggggccgagaggagccgtc
ttcatcgcggatatcaaagtaacgaacccgacccggattgtcgacggcacgtccggcaaa
acaaaggtcgagctggcgcgctactacgacgacatctcagagtgggcgctaccctatctt
cacaaccggccactcacattggtacgggcgcccgacggcatcaatggcgagctgttcttc
caaaagcattcggagcgcgtgcgcataccgggtgtcgaagaacttccggtcgagctccat
cctcgccatccgccgttgctcgttgcaaacaatgcagaatcgcttgtgggactcgctcaa
atgagcgtcgtcgagctgcattcttggaacgccgtcgcaccagacctaacccatccggat
cgcgtcatcttcgatctggatcctgacccgtcgctgccctggtcggcgatgctcgacgcc
gcctcgctcaccaagctcgtgcttgacgagatcggactcaagtcgttcgccaagacgagc
ggcggcaaagggtttcatattgtcgttccgctcacacgtaagcagagctgggcggaagtt
aaggggttctcgcaagcgcttgcgcaacacatggcgaaggtcttgcccgatcacttctca
gcagtcttggggccgcgaaaccgggttggcaaaatcttcatcgactatctgcgaaacagc
cgcggggcaagtacggttgcgccgttctctgttcgcgcgcggcccggtctggcggtgtcg
atgcccattgcctgggacgagttaaaagacgtcactggtggcgatcaatggtcgatgagc
tcagcacttgcccggcaacgctcgctcaacgcggacccttgggaaggttattggaaaacc
cgtcagggcatcacggtagcgatgcgccgcgccatcggcatgcagcgttga

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