Caballeronia insecticola: BRPE64_ACDS13430
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Entry
BRPE64_ACDS13430 CDS
T02684
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
buo
Caballeronia insecticola
Pathway
buo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
buo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRPE64_ACDS13430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buo03400
]
BRPE64_ACDS13430 (mfd)
Enzymes [BR:
buo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRPE64_ACDS13430 (mfd)
DNA repair and recombination proteins [BR:
buo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRPE64_ACDS13430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAN23097
UniProt:
R4WY56
LinkDB
All DBs
Position
1:complement(1384357..1387833)
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AA seq
1158 aa
AA seq
DB search
MPSKAVNAQSSSPLAFVKPGQRFAFDGATGSSDSLAIARYHAAHRESVPLLTVVTASAVD
AQRLAAEIPFFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILIVPA
TTALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLID
LYPMGSALPYRLDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR
WREVFEGDPSRSQIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEGSQLAFVGDLDTA
IKRFTNDTKQRFNFLGHDRERPLLEPRRLFLTDDDFFTFAKPFAQLKFPAVPEGGWAVPL
PGLALDRHADEPLLALRHYLEQTDNRVMLVAESAGRRETIQQLLADNGLRGESRDTFHEW
LTSEAKFTLGIAPLANGFALPAEKLAIITETELYGPLARRAGRRRQEQASNVDSMVRDLA
ELKIGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYQNDAKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGYAFKLEPRDYTKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMAGKQVAIL
SPTTLLAEQHTQTFTDRFADWPVRIAELSRFKSTKEVSQSVQQINEGSVDIVIGTHKLLS
SDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRTMLEALVPE
ARIAVAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVRALKEGREPDLNAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCESSDAIDGILEELVDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAAEQSISLQFVPNPPVDGMKIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRISTVK
ETLRALGGPVRQPVAAVR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccctccaaagccgtcaacgcgcagtccagttctcccctagcgttcgtcaagccaggt
cagcgtttcgccttcgacggcgcgaccggttcgtcggattcgctcgccatcgcgcgctat
cacgcggcacatcgcgagagcgtgccgctcctgacggtcgtgaccgcgagcgcggtcgac
gcacagcgtctcgccgccgaaatcccgtttttcgcgccggacgcccgcgtgcgcctgctg
cccgactgggaaacgctgccctacgacacgttctcgccgcatcaggatctcgtgtccgag
cggctggcgacgctgcacgatctcggcgaaggacgctgcgacatcctgatcgtccccgcg
acgaccgcgctctatcgcatgccgccggcgtcgtttctcgcggcctacacgttctcgttc
acgcagggcgagcgtctggacgaagccaagctcaaggcgcaactgacgctcgcgggctac
gagcacgtgagccaggtcgttcgtccgggcgaatactgcgtgcggggctcgctcatcgac
ctgtatccgatgggctcggcgctgccgtaccggctcgacctgttcgacgatcaggtggat
tcgatccgcgccttcgatcccgacacgcagcgcagcctctaccccgtgcgcgacgtgcgc
ctcttgcccggacgcgagtttccgttcgacgaagccgcgcgcaccgcgtttcgcagccgc
tggcgcgaagtgttcgagggcgatccgagccgctcgcagatctacaaggacatcggcaac
ggcgtgccgtcggcgggcatcgaatattatctgccgctgtttttcgaagagacggcaacg
ctgttccactacttgccggaaggttcgcagcttgcgttcgtcggcgatctcgatacggcc
atcaaacgcttcacgaacgacacgaagcagcgcttcaactttctcgggcacgaccgcgag
cggccgctgctcgaaccgcgccgcctctttctcaccgacgacgatttcttcaccttcgcc
aagcccttcgcgcagctgaaattcccggccgtgcccgaaggcggctgggccgtgccgctg
ccgggcctcgcgctcgaccgccatgccgacgagccgctgctcgcgctgcgccattatctg
gagcagacggacaaccgcgtgatgctcgtcgcggaatcggccgggcggcgcgagacgatc
cagcaattgctcgcggataacggcctgcgcggcgaatcgcgcgacacgttccacgaatgg
ctcacgagcgaggccaagttcacgctcggcatcgcgccgctcgccaacggcttcgcgctg
ccggcggagaagctcgcgatcatcaccgagacggagctttacgggccgctcgcgcgccgc
gccggacgccgtcgccaggaacaggcgagcaatgtcgattcgatggtgcgcgatctcgcc
gagttgaagatcggcgatccggtcgtgcatgcgcaacatggcatcggccgctatatgggc
ctcgtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgagtatcagaac
gacgccaagctctacgtgccggtcgcgcaattgcacgtgatctcgcgctatagcggcgcg
gacccggaaagcgcgcccttgcattcgctcggctccggtcagtgggaaaaggcgaagcgc
aaggcggcgcagcaaatccgcgatacggccgccgaactgctcaacctctacgcgcgccgc
gccgcgcgcgaaggctacgcgttcaagcttgagccgcgcgactacaccaagttcgcggaa
agcttcggcttcgaggagacgcccgatcaggcggcagcgatcgcagccgtcatcggcgac
atgacgagcggcaagccgatggaccggctcgtgtgcggcgacgtcggcttcggcaagacc
gaggtcgcgttgcgtgcggcgttcatcgcggtgatggcgggcaagcaggtcgcgattctc
tcgcccactacgctgctcgccgagcagcacacgcagaccttcaccgaccgcttcgccgac
tggcccgtgcgcatcgcggaactgtcgcgcttcaagagcacgaaggaagtgtcgcagtcg
gtgcagcagatcaacgaaggcagcgtggatatcgtcatcggcacgcacaagctgttgtcg
agcgatgtcaagttcaagcggctcgggcttgtgatcatcgacgaggaacaccgtttcggc
gtgcgtcagaaggaagcgctgaaggccctgcgcgccgaagtcgacgtgctcacgctcacc
gcaacgccgattccgcgcacgctcggcatggcgctcgaaggcctgcgcgatttctcggtg
atcgcaaccgcgccgcagaagcgcctcgccatcaagaccttcgtgcggcgcgaggaagac
ggcgtgattcgcgaagcgatgctgcgcgaactcaaacgcggcgggcaggtgtacttcctg
cacaacgaagtcgaaaccatcgagaaccgccgtaccatgctggaggcgctcgtgcccgag
gcgcgcatcgcggtcgcgcacggccagatgcacgaacgcgaactcgaacgcgtgatgcgc
gatttcgtcggccagcgcgcgaacgtgctgctgtgtacgacgatcatcgagaccggcatc
gacgtgccgagtgcgaacaccatccttatgcatcgcgcggacaaattcggcctcgcgcag
ttgcaccagttgcgcgggcgcgtcgggcgctcgcatcaccaggcgtatgcgtatctgctc
gtgcacgatccgcaggcgctgacgaagcaggcgcagcgccggctggaagcgatccagcag
atggaagaactcggctcgggcttctatctcgcgatgcacgacctcgaaattcgcggcacc
ggcgaagtgctcggcgacaaacaatccggcgaaatccacgagatcggcttccagctctac
accgacatgctgaacgacgccgtgcgcgcgctcaaggaaggccgtgagccggacctcaac
gcgccgctcgcggcgacgaccgagatcaacctgcacgcgcccgcgatcctgcccgccgat
tactgcggcgacgtgcaggagcgtctgtcgctctacaaacgtctcgcgaactgcgaatcg
agcgatgcgatcgacggcattctggaagagctcgtcgaccgcttcggcaagctgccgccg
caggcgcatgcgctcgtcgagacgcatcggctgcggctcgccgcgaaaccgctcggcatc
tcgaagatcgacgccgccgaacaatccatctcgctgcagttcgtgccgaatccgcctgtc
gatggcatgaagatcatcgagatggttcagaagcacaagcacatcaagctggcgggacag
gacaagctgcgcatcgagacgcgcagccccgatctcgcggtgcgcatctcgacggtcaag
gagacgctgcgcgcgctcggcggaccggtgcggcaaccggttgcggcggtgcgctaa
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