KEGG   Brevundimonas vesicularis: CEP68_04590Help
Entry
CEP68_04590       CDS       T04934                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bvc  Brevundimonas vesicularis
Pathway
bvc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bvc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CEP68_04590 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bvc03400]
    CEP68_04590 (ligD)
Enzymes [BR:bvc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CEP68_04590 (ligD)
DNA repair and recombination proteins [BR:bvc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CEP68_04590 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ASE38833
UniProt: A0A1Z3U6C6
LinkDB All DBs
Position
complement(886778..889339)
Genome map
AA seq 853 aa AA seqDB search
MRGELKTYQAKRRFGDTPEPKGAKGKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTTEWTASKPTGRKGPAKPTPSKAAEKDKKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFSDLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDEKTEALVYFAFDLLSEGAEDLRKLPLSHRKARLQAYVDRIGK
TAGARLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVREKGGVRYLGRVGTGYGEAVTKTLVPALKGVAAQKSPFAGA
GAPKAAKDIHWVKPLLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTQAPQPPTDMGE
AKKTTTTVRPAGKPGKVVVAGATLSSPDKVLWPAVGDRPAITKADLARYYEAAAERILPH
VADRPTSIIRAPEGIAGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAIAQSG
GLELHPWGCAPGQPEIPEQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWADFRAS
AVSLKSALKAMGV
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgacacgcccgagccg
aagggcgcgaagggcaagcgcgcgaagggaggcttccgctatctgatccagcgccatgcg
gcgacgcggctgcactatgatttccgcatcgaggcggacggggtgctgaaatcctgggcc
gtgaccaaggcgccgtcgcgcgacacggcggtcaaacgtctggcggtcgaggtcgaggat
catccgctggattacggatcgttcgaaggcacgatccccgacggcaactacggcgccggc
acggtgcagatgtgggatgtcggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgaacggctgaagggcaaatgggcg
ctgatccggctgaagagcgatcggggcaaaccctccaaacgcaacaactggctgctgctg
aaggagaaggacgacttcgccgtggcgggagagggcgatgcgctcgccgaaatcgacgcc
tcggtgacgaccgggcggtctctggctgaaatcgcggatggaacgacggaatggacggcg
tccaagccgacggggcgtaaaggcccggccaagcccacgccctcgaaagcggcggagaag
gacaagaagccgccggccttcgtgccgatccagctgtgcaaggtgaccgaccatccaccg
ggcgggacgggctgggcgcacgagatcaaattcgacggctatcgcatccagatcggcgtg
ggcggggggcgggcggtcctgaggacccgcaagggtctggactggagcgacaagttctcg
gatctggcggcggatgcggcgacctggcccgacgccgtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggccgccatttcggacgagaag
acggaagccctggtctatttcgccttcgacctgttgtccgagggggcggaggatctgcgc
aagctgccgctgtcgcatcgcaaggcgcggctgcaggcctatgtggaccggatcggcaaa
acggccggggcgcggctgcgctacgtcgagcatttcgcctcgaccggccaggcggtgctg
gagagcgcctgtcgcatggatctggaaggcgtgatctccaagaaactggacgccccctat
catgccgggcggtcatcgacctggctgaagtccaaatgccgggggcgcgacgaagtggtg
atcggcggctggtcgtccgagggtggcacgcggttccgctctctgctcgtcggggtcagg
gaaaagggcggtgttcgctatctgggaagggtcgggaccggctatggcgaggccgtgacg
aagacgcttgttccggcgttaaagggcgtggcggcgcagaaatctcccttcgccggggcg
ggcgcgccaaaggcggccaaggacatccattgggtcaagccgttgctggtcgccgaggtc
gagcacggcggctataccgaatccggatcgctgcggcaggcggcgttcaaagggttgcgc
gaagacaagacggccgcagaggtcacccaggcgccgcaaccgcccacggatatgggcgaa
gccaaaaagaccacgaccacggtgcgaccggccggaaagccgggcaaggtggtcgtggcg
ggcgcgaccctctccagccctgacaaggtgttgtggcccgccgtcggcgaccggccggcg
atcaccaaggccgatctggcgcgctactacgaggcggcggccgagcggatcctgccccat
gtggcggaccggccgacctcgatcatccgggcgcccgaggggatcgccggcgagaccttc
ttccagcggcacgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaggcc
cgcaccccttatgtcgccgccgtcgatgtcggcggcctggtcgccatcgcccagtcgggc
gggctggaactgcacccctggggctgtgcgcccggccagccggaaatccccgagcagatc
accttcgacctggatccggacgaggggctggacttcgccgacgtcattgccgcgtccaag
gtcgtgaaggcgaagatcgaggcgctgggtctggccgccttcgtcaagacgaccgggggg
aagggtttgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgcgttacctgggat
cagaacaaggccttcgccaaggcggtggccgaggccatacgcgccgaggcgccagaccgg
ttcaccacgaccctggccaagaaggcgaggggcggaaagatcttcatcgactatctgcgc
aacgggcggatggcgacggcggtcgcgccctggtcgccgcgagcacggccgggcgccggg
atcgccttcccgctgtcgtgggggcaggtaaaggccgggctggaccccgccgcattcaac
ctttggacctatgcggccttgctgaagaagcccgatccctgggccgatttccgcgcctcg
gcggtcagtttgaaatcggcgctgaaagcgatgggcgtctag

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