Bacillus amyloliquefaciens XH7: BAXH7_03487
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Entry
BAXH7_03487 CDS
T01836
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bxh
Bacillus amyloliquefaciens XH7
Pathway
bxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAXH7_03487 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxh03019
]
BAXH7_03487 (rnr)
03016 Transfer RNA biogenesis [BR:
bxh03016
]
BAXH7_03487 (rnr)
Enzymes [BR:
bxh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BAXH7_03487 (rnr)
Messenger RNA biogenesis [BR:
bxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAXH7_03487 (rnr)
Transfer RNA biogenesis [BR:
bxh03016
]
Prokaryotic type
tRNA degradation factors
BAXH7_03487 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
AEK90601
LinkDB
All DBs
Position
complement(3241182..3243515)
Genome browser
AA seq
777 aa
AA seq
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MEKEAFMDRLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMNRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctctcgttcatgaaggaagaggcgtacaag
ccccttaccgttcaggaacttgaggagatgctgaacatcacggaagccgaagaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggtcagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgcc
aagggcttcgcgtttctgctgccggaagatacctcattaagcgacgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggtgcggctcaactcccagtca
agcggatcgagacaggaaggcactgtcatccgaattctggaaagaagcatagaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggctttgtcattccggatgataaaaaaatc
acgagcgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtgaaactgacaagctatcctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgacccgggcattgatattttatcaatcatccataagcacggc
ctgccgggagactttccggccgaagcgatggagcaggcaacaagtacgcccgacaccatc
gatgaaaaagacataaaagaccgccgtgatctccgtgatcaggtcattgtcaccattgac
ggcgcggatgcgaaggatctcgatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgacgtcagccattacgtcacggagaattccccgatt
gataaagaagcgctggaaagagggacaagcgtgtacttggtagaccgggtcatcccgatg
atcccgcacaggctgtctaacggaatctgttctttaaatccgaaggtcgaccgcctgacg
ctttcctgcgaaatgacaatcaaccagcagggacaggtgacggagcacgagatcttccaa
agcgtcatcaaaacgacggaaagaatgacctattcagatgtcaaccgaatcctcacagaa
gacgacgctgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgcctggcggaaattctccgggcgaaacggatgaaccgcggcgccgtggattttgatttt
aaagaagcgaaggtgctcgtcgatgaggaaggcgccgtaaaggacgtcgtcatcagagaa
cgctcagtagccgaaaagctgattgaggaattcatgcttgtcgcaaacgaaacggtggcc
gaacacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgct
gaaaaactgcaaaagttcctggagttcgtcacgacattcggttatatcgtcaaagggaca
gccggagacattcatccgcgcgcattgcaaagcattcttgacgaagtccgggaccgtccg
gaagaaacagtgatctcaacagtcatgctccgttccatgaagcaggcgaaatacgacccg
caaagcttgggccatttcgggctggcgactgaattttatacacacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacagactgatcagaacgtatttgatcaacggacaa
tcggacgaagcaactcaagaaaaatgggccgaacgcctcccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgacgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggagtttgacggcatgatcagttccgtcacgaat
ttcggaatgttcgtcgagctgccgaatacgattgaagggcttgtgcacgtcagctttatg
acggatgattattaccgttttgatgaacagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggggatgaaatcacggtcaaggtcgtggacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacaaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgtgtattaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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