Bacteroides xylanisolvens: BXY_21730
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Entry
BXY_21730 CDS
T02579
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bxy
Bacteroides xylanisolvens
Pathway
bxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXY_21730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxy03019
]
BXY_21730
03016 Transfer RNA biogenesis [BR:
bxy03016
]
BXY_21730
Enzymes [BR:
bxy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BXY_21730
Messenger RNA biogenesis [BR:
bxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BXY_21730
Transfer RNA biogenesis [BR:
bxy03016
]
Prokaryotic type
tRNA degradation factors
BXY_21730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CBK67248
UniProt:
D6CYJ6
LinkDB
All DBs
Position
2606664..2608820
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AA seq
718 aa
AA seq
DB search
MAKKKEKKEKKAGKRMSKKELAALLIDFFHAKSSETLSMKYIFSELRLTTHPQKMLCVDI
LHDLLADDYISEIEKGKFRLNSHGTEMTGTFQRKSNGKNSFIPEEGGDPIFVAERNSAHA
MNNDKVKITFYAKRKNREAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFI
PKDKLKGGKTGDKAIVKVTEWPDKAKNPIGQVIDILGQAGDNTTEMHAILAEFGLPYVYP
KAVETAADKIPAEISAEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVH
IADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFD
ITEKGEVRDSRIVHTVINSDRRFTYEEAQQIIETKEGDFKEEVLTLDTIAKALREKRFSA
GAINFDRYEVKFEIDEKGKPISVYFKESKDANKLVEEFMLLANKTVAEKIGCVPKNKKAK
VLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIET
VSIRAMQKARYSTHNIGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDGGRSVSEAKY
EDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCE
GLVPVRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDAITVRVARANLEKKQLDFELIEK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaaagaaaagaaagagaaaaaggccggcaagagaatgagtaagaaagag
ctggcagcactattaatagactttttccatgccaaatccagcgagaccttgagtatgaaa
tatatattttcggaactgcgtctcactacccatccgcaaaaaatgttatgcgtcgatata
ttacatgaccttttagctgacgattatatcagtgaaatagaaaaaggaaagttccgcctg
aacagtcacggaacggagatgacaggtactttccaacggaagagcaacggtaagaactcg
tttattcctgaagaagggggcgacccgatattcgtggccgaacgtaattccgcacatgcg
atgaataacgataaggtaaagatcaccttctatgccaaacggaagaacagagaggccgaa
ggagaagtcatcgaaatattggaacgcgccaacgatacattcgtcggcacactggaagta
gctaagtcatacgcattcctggtgacagagaaccgtacattagccaatgatattttcatc
ccaaaagataagctgaaaggcggaaagaccggagataaagccattgtgaaagtaaccgaa
tggccggacaaggcaaagaatcctatcggacaagtaatagatatattaggtcaggccggt
gacaataccacagagatgcacgcaattcttgcggaattcggtctgccgtatgtatatcca
aaagcagtagagacagcagcagataagattcctgccgagatttcagcagaagagattgcc
aaacgcgaagatttccgtaaggtaacaactttcaccatcgacccgaaagatgccaaagac
tttgacgacgcactttccatccgtaagctaaaggacggattgtgggaagtaggtgtacac
attgccgacgtgacacattacgtaaaagaaggcagcatcatcgacaaggaagcagaaaag
cgggcaacttccgtttatctggtagaccgtaccatcccgatgcttcccgaacggttgtgt
aacttcatttgttcactccgcccgaacgaagaaaaactagctttctccgttatcttcgat
attacggaaaaaggagaagtcagagactcacgcatcgtacatacggttatcaactccgac
cgtcgcttcacctacgaagaggcacaacaaatcatagaaacaaaagaaggagacttcaaa
gaagaagtactcacattagatacgattgccaaagcactgcgcgaaaaacgcttctctgca
ggagctatcaacttcgaccgctacgaagtgaagttcgaaattgacgaaaaaggaaaacca
atcagcgtttacttcaaggagtcaaaagatgccaataaactagtggaagaattcatgttg
ctcgctaacaagaccgtagcagaaaagataggatgtgtgccgaagaacaagaaagccaaa
gtgcttccttaccgtatccacgacctacccgatccggagaagttggagaacttgtcacag
ttcatcgcacgcttcggctacaaagtgcgtacaagcggaacgaagactgatatttcaaaa
tccatcaaccatttattggacgacatacacggaaagaaagaagagaacctgatagaaacc
gtatccatccgcgccatgcaaaaagcacgttactcaacccataacatcggtcactacgga
ctagctttcgaatattacactcactttacttctcccatccgccgtttcccggacatgatg
gtacaccgtttggtgacgaagtatatggacggaggacgcagcgtatccgaagctaagtac
gaagacctctgcgaccacagctcgaacatggaacaaattgcagccaatgccgaacgtgct
tccatcaaatataaacaggtggaatttatgagcgaacgtctggggcagatttacgacggt
gtaatctccggcgtaaccgagtggggactttatgtagaattgaacgaaaacaaatgtgaa
ggtctggtccctgttcgtgatctggatgatgactactacgaattcgacgagaagaactat
tgtcttcgcggacgccgcaaaaacaaaatatacagtttgggagacgctattactgttcgg
gtagctcgtgccaatctggaaaagaaacaattggattttgaattaatagaaaagtaa
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