KEGG   Bipolaris zeicola: COCCADRAFT_3531Help
Entry
COCCADRAFT_3531   CDS       T03110                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bze  Bipolaris zeicola
Pathway
bze03030  DNA replication
bze03410  Base excision repair
bze03420  Nucleotide excision repair
bze03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCCADRAFT_3531
   03410 Base excision repair
    COCCADRAFT_3531
   03420 Nucleotide excision repair
    COCCADRAFT_3531
   03430 Mismatch repair
    COCCADRAFT_3531
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bze03032]
    COCCADRAFT_3531
   03400 DNA repair and recombination proteins [BR:bze03400]
    COCCADRAFT_3531
Enzymes [BR:bze01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCCADRAFT_3531
    6.5.1.6  DNA ligase (ATP or NAD+)
     COCCADRAFT_3531
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     COCCADRAFT_3531
DNA replication proteins [BR:bze03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    COCCADRAFT_3531
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     COCCADRAFT_3531
DNA repair and recombination proteins [BR:bze03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCCADRAFT_3531
   NER (nucleotide excision repair)
    Other NER factors
     COCCADRAFT_3531
   MMR (mismatch excision repair)
    Other MMR factors
     COCCADRAFT_3531
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF5427
Motif
Other DBs
NCBI-GeneID: 19147960
NCBI-ProteinID: XP_007710426
JGI: 3531
UniProt: W6YCA3
LinkDB All DBs
Position
Unknown
AA seq 883 aa AA seqDB search
MNSPLKRRKKNDGSGKPVRSLDYFFAKQAAKATTKDAPTDPTSSGAPAEQDDSGLTDEEL
ARKLQEQWDKEDRERGQNVVPGSSDELYEEPEKRTTNMAANEGSGNAKKSESPACDVVME
KTPELAPAPKNNTLTLQSTASEEDTITANIPFDQSPLEFNPAEYIPDLKKHWVADGGHAT
YALLTRCFILINSTTSRIKIVDTLVNLLRTIIESDPSSLLPAVWLSTNAISPPYIDLELG
LGGSAISKALKKVCGLDNASLKALSSKHGDAGDVAFEAKKKQSFTLRKPKPLTIKSVFDS
LVKIANSKGNGSVENKQRIVERLVQDARGAEESRYVVRTLVQHLRIGAVKTTMLIALSRA
FMLSKPPGAEFETRDRKDMAKMKKEELVEIYSRNEEIVKACFARRPSYNDLIPVLLEIGI
CDELLVRCGLALHIPLRPMLGSITRDMGEMLTKLQSRDFACEYKYDGQRAQVHCDAKGKV
TIFSRHLEVMTDKYPDLVALVPKIRGEGVSSFILEGEVVAVDRESGDLKPFQTLANRARK
DVVIGAVTVDVCLFAFDLMYLNGEELLNRPFRERRSLLRSLFVEIPHHFTWVKSLDATSA
DVEAVQSFFQGALDIKCEGIMVKVLDNLPNPDLLTEIDELGLEKTSSLPPTPKKKKPTKS
KAKGKSTEAETDEPKASGRRKALLSTYEPDKRLDSWLKVKKDYSTTSETLDLIPIAAFHG
SGRKAAWWSPILLAIRNAETGQLEAVTKCMSGFTDAFYKANRAKYDPGDADSTTVLPGKP
HYVEYNGGAGTPAVWFEPQEVWEVAFADLTLSPTYTAAIGLVSDERGLSTRFPRFLRVRE
DKSIEEATEAEELATLYRKQEAKAPKKDNDGGRAREVEDEDMD
NT seq 2652 nt NT seq  +upstreamnt  +downstreamnt
atgaacagcccgttgaagcgcagaaagaagaatgatgggtcaggaaagccggttcgtagc
ttagactacttcttcgcgaagcaagcggcaaaagcgacaaccaaggatgcgcctacggat
cctacgtccagtggagcgcctgcagagcaagatgactcgggattgacagacgaagaactt
gcccgcaaactccaggaacaatgggacaaggaggatcgcgaaaggggtcagaatgtggtg
cctggaagctcagatgagttgtatgaagagccggagaagcgtaccacgaatatggcggcg
aatgaaggttcaggcaatgcaaagaaatctgaatcaccagcctgtgatgttgttatggag
aaaacacccgaacttgcacctgcgccaaagaacaatactctcacgctacaatcaaccgca
tccgaagaagatacaataaccgcaaatatacccttcgaccaaagcccgcttgaatttaat
cctgcggaatacatacctgacttgaaaaagcattgggtagccgatggaggtcacgcgacc
tatgctcttctgacaagatgcttcattctaatcaatagcaccacgagtcgcatcaaaatt
gtagatactcttgtcaacctactacgaacaatcatcgagagcgacccaagcagcctactc
ccggctgtctggctttccacgaacgcgatatcgccaccgtacattgatcttgaactagga
cttggagggtccgcaatctccaaggcgttgaagaaggtgtgcggattagacaacgcaagc
ttaaaggcattgagcagcaagcacggagacgctggtgatgtggcattcgaagcaaagaag
aagcagtcatttaccctccgcaaaccaaaacccttgaccatcaagagcgttttcgactcg
ttggtcaagattgcaaatagcaagggaaatggcagtgttgagaataaacagagaatcgtc
gagagactcgttcaagatgcgagaggtgcggaagaaagtcgttacgtcgtacgaaccttg
gtgcagcatctgcgcataggcgccgtcaagaccacgatgctcattgcattatcgcgagcg
ttcatgttgtcgaagcctccgggagctgagttcgagacacgtgaccgaaaagacatggcg
aaaatgaagaaagaggagctggtcgaaatttacagcaggaacgaggaaatcgtcaaagca
tgctttgcccggagaccaagctacaacgaccttatacccgtacttctcgagatcggtatc
tgcgacgagctgctcgtgcgttgcggcctggcccttcacattcctcttcggcccatgttg
ggtagcatcacgcgtgacatgggtgagatgctcaccaaactgcaaagtcgagattttgct
tgcgaatacaagtacgatggacaacgagcacaggtgcattgcgatgcaaagggcaaagtc
acaatcttttcgcgacacctcgaagtcatgacggacaagtaccccgacttggtggcgctc
gtacccaagatacgaggcgaaggcgtgtcgagctttatcctcgaaggtgaagtggtagcc
gttgatcgagagagtggtgacctcaagccattccagacactagccaaccgcgcgagaaaa
gatgtagtcatcggagcagtaacggttgatgtctgtctcttcgcatttgatctcatgtac
ctcaacggcgaggaacttctcaaccgacccttcagagagcgaaggtcgctacttcgaagc
ctgtttgttgaaatccctcatcacttcacctgggtcaaaagcctcgacgccacatccgcc
gatgtagaagccgtccagtccttcttccaaggcgccctagacatcaaatgtgaagggata
atggtcaaagtcctcgacaacctccccaacccggatctcctcaccgaaatagatgaactc
ggcctcgaaaagacatcctcgctgccccctacaccgaagaaaaagaaacccaccaagtca
aaagcaaaaggaaaatccacagaggctgaaacagacgagcccaaagcctcgggccgccgc
aaagccttgctatcaacatatgagcccgataaacgcctcgactcatggctcaaggtaaag
aaagactacagcaccacttcggaaaccctcgacctaatacccattgcggcatttcacggg
tcaggccgaaaagcggcatggtggtccccgatcctcctcgccattcgcaacgcagaaacc
ggccagctcgaggcagtcacaaagtgcatgtctggcttcacagacgccttttacaaagcc
aaccgcgccaagtacgatcccggtgatgctgactcgactaccgtgttacccggcaagcca
cactatgtggagtataatggtggggcgggcacgccggccgtgtggtttgagccacaggag
gtatgggaggtggcttttgcggatctgacgctcagtcctacgtacacggctgcgattggg
ctggtgagcgatgagcgtgggctgagtacgaggtttccgcggttcctgcgggtgagggaa
gataagagtattgaggaggcgacggaggcggaggagttggcgactttgtataggaagcag
gaggccaaggcgccaaagaaggacaatgatggtggtagagcaagagaggtggaggatgag
gatatggattag

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