Coraliomargarita akajimensis: Caka_2669
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Entry
Caka_2669 CDS
T01204
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caka_2669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caa03019
]
Caka_2669
03016 Transfer RNA biogenesis [BR:
caa03016
]
Caka_2669
Enzymes [BR:
caa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Caka_2669
Messenger RNA biogenesis [BR:
caa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Caka_2669
Transfer RNA biogenesis [BR:
caa03016
]
Prokaryotic type
tRNA degradation factors
Caka_2669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH_2
UBN_AB
Motif
Other DBs
NCBI-ProteinID:
ADE55684
UniProt:
D5EPV1
LinkDB
All DBs
Position
complement(3229740..3231914)
Genome browser
AA seq
724 aa
AA seq
DB search
MKQKHNVTVDGLGIEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVD
YREKFSAGGKFPGGYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQ
THEPDVLMVNAASAATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYVGS
ETEMMMIEGSAEFISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVLTPADV
TEFCEAHAAEKVKEALGHDSYTERKLAIEAIAKDTTAALEEKLGADNVDGNDVARAFDEI
QEKLYRQNILETGRRVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSR
DVQDIDGLTGGATSKSFILHYNFPPFSTGEAGRFGFTGRREIGHGALAERSLLPILPPED
EFPYAIRVVSEVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKDADGKIT
KHVILTDILGAEDHFGDMDFKIAGTPEGITGFQLDLKIQGLPFDITLEAIKQNRDARMKI
IAIMAEHLPESRQDLREHAPRIHTIKIDPEKIGALIGPGGKNIRRITEVSGAQIDIDEDN
SGRVLVFATDKESMDRAIQEVELCTAEIEVGKTYRGIVRGIKDFGAFVECLPGKEGLVHI
SELADFRVNKTEDICKLGDEMVVKCIGMEKGKVRLSRKAALEDAKEASEEDAPAAEEAAT
EESE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaaacacaacgtaaccgttgacggtctcggtatcgagatctccaccggcaca
ctcgcaggccttgccagcggtgccgtcaccatccgccaaggcgaaaccgaactcttcgtt
tccgccactgcggcatctgcactccgccccgggcaggacttcttcccgctcactgtcgac
taccgcgaaaagttctctgcaggcggtaaattcccaggcggctacttcaagcgtgaaggt
aagccatccgaaaaggaaatcctcacttcccgcctttgcgaccgtccacttcgcccgctc
ttcccgaagggcttcatgaatgaagtgcaggtcatcggtctgctcctcgcaaccgaccaa
acacacgagccagacgtgctcatggtcaatgcagcatccgctgccacactgatttcggat
attccatggaatggcccggtgggctgtgttcgtgtcggtcaaatcgacggtgagttcgtc
accaacccgacccacgacgaaatgctcgattccgacctcgacctcatctacgtcggttcc
gaaaccgaaatgatgatgatcgaaggttccgctgagttcatctccgacgagcgtttctac
gaagctctcgaatacggccaacaggccatccagccaatcatcgcagcccaaaaagaactc
gcgaagctcgctggcaaggagaagaaggaattcccactcgtcctcacacctgcagacgtc
actgaattctgcgaagcacacgctgctgaaaaggtgaaggaagccctcggccacgatagc
tacaccgaacgcaagcttgcgatcgaagctatagccaaagacaccaccgctgcgttggaa
gaaaagctgggtgctgacaatgtagacggcaacgacgttgcgcgtgctttcgacgaaatc
caagagaagctgtaccgccaaaacatccttgagaccggtcgtcgtgttgacggtcgtggt
gccaaggatctgcgcgcaatctcttgcgacacgggcgtccttccacgcgttcacggttct
gccgtcttcaatcgtggtgaaacacaggcattggttatttccaccctcggcaccagccgc
gacgtgcaggacatcgatggtctcactggtggcgcaaccagcaagtccttcatccttcac
tacaacttcccgccgttctccactggtgaagcgggtcgtttcggcttcaccggtcgccgc
gaaatcggtcacggtgcactcgctgagcgttcgctcctgccgatccttccaccagaagac
gagttcccatacgcaattcgcgtcgtatccgaagtcatgagctccaacggctccacttcg
atggcatcgatctgtggtggctgcctctccctcatggacgccggtgtgccaatcaccgca
ccatgtgcaggtatctctaccggtctcgtaaccgagaaggatgccgacggaaagatcacc
aagcacgtcatcctcaccgatatcctcggtgcagaagaccacttcggcgatatggacttc
aagattgcaggtacaccggaaggcatcactggcttccagctcgacctcaagatccaaggt
ctgccattcgacatcacactcgaagcgatcaagcaaaaccgtgacgcgcgcatgaagatc
atcgcgatcatggccgagcacctgccagagagccgtcaggatctgcgcgagcacgcacca
cgtatccacaccatcaagatcgacccagagaagatcggtgccctcattggcccgggtggt
aagaacatccgccgcatcactgaagtctccggtgctcaaatcgacatcgatgaggacaat
agcggccgcgttctggtcttcgccactgacaaggaatccatggatcgtgcgattcaggaa
gtcgagctctgcaccgcagaaatcgaagtcggtaagacctaccgtggtatcgtccgtggc
atcaaggacttcggcgcattcgtcgagtgcttgccaggcaaggaaggtctcgtccacatc
tccgagcttgctgacttccgcgtcaacaagaccgaagacatctgcaagctgggcgacgaa
atggtcgtgaagtgcatcggcatggaaaagggtaaggttcgcctctcccgcaaggccgca
ctcgaagacgccaaggaagcatccgaagaggacgctccagccgctgaagaagcagctact
gaagagagcgagtaa
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