Caldithrix abyssi: Cabys_2779
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Entry
Cabys_2779 CDS
T04549
Name
(GenBank) DNA polymerase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
caby
Caldithrix abyssi
Pathway
caby03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cabys_2779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_2779
Enzymes [BR:
caby01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Cabys_2779
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Cabys_2779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Neuropep_like
Motif
Other DBs
NCBI-ProteinID:
APF19527
UniProt:
H1XWX4
LinkDB
All DBs
Position
complement(3308662..3309462)
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AA seq
266 aa
AA seq
DB search
MNEKELIENIEQFFRWYRQVYDSELILDHPVARVSIAEPSGPAVQKGRQGHAQTQNISRR
AVQYRQTSPELQAFYEEIRDCQQCELHKTRKNFVFGYGNAQAEVMFVGEAPGREEDEQGL
PFVGAAGKLLDKMFASIGLSRDNVYIANVLKCRPPDNRDPRPEEIARCEPYLIKQIQMIK
PKLIVALGRFAAQSLLRLEQPLGVMREGDHQYQNIPVIVTYHPAALLRNPALKQKAWQDL
KKIKRFLDARTGESDSPHPLISPVPE
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaagagctgatcgaaaacatcgaacaattttttaggtggtatcggcaggtt
tacgattccgaactcattttagaccatcccgtggcaagggtgagcattgcggaaccttcc
ggtcctgccgtgcaaaaggggcggcagggacatgcgcaaacacaaaacatttcccgacgc
gcggtgcaatacagacaaaccagtccggagttacaggccttttacgaagagatcagagac
tgccagcaatgtgaactgcacaaaacgcgcaagaactttgtgtttggttacggaaacgcg
caggccgaggtgatgtttgtgggcgaggcgcccggcagagaagaagacgagcagggcctg
ccttttgtgggcgcggcgggcaaattgttagataagatgttcgcttccattgggctgagc
cgcgacaacgtgtacatcgccaatgtgttaaagtgtcggcctccggataaccgcgatccg
aggccggaagaaattgcccgttgcgaaccgtatttgattaaacaaatccagatgatcaaa
ccgaaattgattgtggcgctgggcaggtttgccgctcagtcattactaagacttgaacag
cccttaggcgtgatgcgagagggcgaccatcagtatcaaaatattccggttattgtgacc
taccatccggcggctttgctgcgcaatcccgctttaaaacaaaaagcctggcaagacctg
aaaaagattaaacgttttttagacgcccggacaggggaatcggatagccctcaccccctc
atttcccctgtcccagaataa
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