KEGG   Collinsella aerofaciens: CSV91_09460
Entry
CSV91_09460       CDS       T05143                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
caer  Collinsella aerofaciens
Pathway
caer03030  DNA replication
caer03410  Base excision repair
caer03420  Nucleotide excision repair
caer03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:caer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CSV91_09460
   03410 Base excision repair
    CSV91_09460
   03420 Nucleotide excision repair
    CSV91_09460
   03430 Mismatch repair
    CSV91_09460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:caer03032]
    CSV91_09460
   03400 DNA repair and recombination proteins [BR:caer03400]
    CSV91_09460
Enzymes [BR:caer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CSV91_09460
DNA replication proteins [BR:caer03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CSV91_09460
DNA repair and recombination proteins [BR:caer03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CSV91_09460
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CSV91_09460
   MMR (mismatch excision repair)
    DNA ligase
     CSV91_09460
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CSV91_09460
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH DZR_2 RUBY_RBDX zf-NADH-PPase
Other DBs
NCBI-ProteinID: ATP54735
UniProt: A0A2D1TZD6
LinkDB
Position
2185589..2187817
AA seq 742 aa
MEQSSLFGDGVDIDTETPASADAAAPADAHAQAAARAAELRHELDYHAYRYYMLDAPEIT
DAAFDKMLVELQEIEAAYPDLVTPDSYTQRVGGYVSEQFTPVTHMARMYSMDDAMDLDEL
DAWLQRTEDALGAGSVTYTCELKIDGLGVALTYQNGTFVRAATRGDGTTGEDVSLNVRTI
KDVPMHLSEAALAHMGAERERTIEVRGEVYMPKGSFVRLNDGADAEGRDPFANPRNAAAG
SLRQKDPKVTARRDLATFIYAIADTDPLHVHSQREFLDWLRSAGFSVNPNVARCATPAEV
HEFCAQALEHRGDLDYDIDGVVVKVDSFQQQLDLGFTARAPRWAIAFKFPPEEKQTVLRE
IRIQVGRTGVLTPVAEFDPVTVAGSTIARATLHNIDEIRRKNVREGDTIIVHKAGDVIPE
VVGPVLDKRPADSVDWHMPEVCPVCGSPVVHEDGEVAYRCVSIDCPAQLKERLLHWVSRG
CMDVDGLGDEIVDKMIAAGLIHDVADFYQLTVDDIAGLDTGRVYASSNSKKGVKKGDPIP
VGLKTAEKIIAELNKSKSQPLGRVLFALGIRHVGKSVGEVIAERFLSIDKLILASEEGIA
ECEGIGPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADA
QPLAGLTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQL
GVPVLDEDALEQILATGQVPEA
NT seq 2229 nt   +upstreamnt  +downstreamnt
atggagcaatcgagcctgtttggtgacggcgtggacatcgataccgaaacgcccgcgagc
gcggatgccgctgcaccggccgacgcccatgcccaggccgccgcgcgcgcggctgagttg
cgccacgagctcgattaccacgcctatcgctactacatgctcgacgcgcccgagatcacg
gacgccgcctttgacaaaatgctcgttgagctgcaggagatcgaggcggcctatcccgac
ctggtgacgcccgacagctatacccagcgcgtgggcggatacgtgagcgagcagtttacg
ccggtcacgcacatggcacgcatgtattccatggacgatgccatggacctggacgaactc
gacgcgtggctccagcgcaccgaggacgcgctcggtgccggtagcgtcacctatacctgc
gagcttaagatcgacggtctgggcgtggcgcttacctaccaaaacggcacctttgtgcgc
gccgccacgcgcggtgacggcaccacgggcgaggacgtgtcgctcaacgtccgtaccatc
aaggacgtgcccatgcatctgtccgaggcggcgctcgcccacatgggtgccgagcgcgag
cgtaccatcgaggttcgtggcgaggtctacatgcccaagggcagctttgtgcgcctgaac
gacggggccgatgccgagggccgcgacccctttgccaacccgcgcaacgccgccgccggc
agcctgcgccaaaaggatcccaaggtcacggcgcgccgcgacctggctacctttatctac
gccatcgccgataccgacccgctgcatgttcacagccagcgcgagttcctcgattggctg
cgtagcgccggttttagtgtcaaccccaacgtggctcgttgcgccacgccggccgaggtc
cacgagttctgcgcccaggccctcgagcatcgcggtgacctggattacgacatcgatggc
gtggtcgtaaaggtcgacagcttccagcagcagctcgacctaggttttaccgcacgtgcg
ccgcgctgggccatcgcctttaagttcccgcccgaggaaaaacagactgtcctgcgcgag
atccgcatccaggtgggccgcaccggcgtgctcacgccggtggccgagttcgacccggtg
acggtcgccggctccaccatcgcgcgcgccacgctgcacaacatcgacgagatccgtcgc
aaaaacgtgcgcgagggcgacactatcatcgtgcacaaggcaggcgacgtgatccccgag
gtcgtgggcccggtactcgacaagcgcccggctgattcggtcgactggcacatgcccgag
gtttgccccgtgtgcggcagccccgtggttcacgaggatggcgaggtggcctaccgctgc
gtgtccatcgactgccccgcacagctcaaggagcgcctgctccactgggtgagccgcggc
tgcatggacgtggacggcctgggcgacgaaatcgtcgacaagatgatcgccgccggccta
atccacgatgtcgcggacttctaccagctcacggtcgacgacatcgccggactggacacg
ggccgcgtgtacgccagctctaacagcaaaaagggcgtcaagaagggcgaccccatcccg
gtgggtctcaagacggccgaaaaaatcatcgccgagctcaacaagtccaagagccagccg
ctcggtcgtgtgctgtttgccctgggcatccgccacgtgggcaagagtgtgggcgaggtc
attgccgagcgattcctgtcgattgacaagctcatcttggcgagcgaagagggcatcgcc
gagtgcgagggcatcggtcccaagattgcggcgagcgtcaagcagttcctggccgtgccc
gagaaccttgccgtgctggagcgcctgcgccaagcgggtctttcgctcgaggtcgacttg
ggcgccgcgcacgcgcaagctgcagctgatgccggcgtagcgggcgagctcgccgatgca
caaccgctcgcgggcctgaccttcgtgctcaccggcacgctcgtcaaccgcacccgcgac
gaggcgggcgcggcgctcaaggtgcttggcgccaaggtttcgggcagtgtgtcaaagaag
acgagctatctggttgccggccccaaagcgggctccaagctcaccaaggccgagcagctg
ggtgtacctgtgctggacgaggacgcgctcgagcagatcctggcgactggtcaggtgcca
gaggcgtaa

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