Collinsella aerofaciens: CSV91_09460
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Entry
CSV91_09460 CDS
T05143
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caer
Collinsella aerofaciens
Pathway
caer03030
DNA replication
caer03410
Base excision repair
caer03420
Nucleotide excision repair
caer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSV91_09460
03410 Base excision repair
CSV91_09460
03420 Nucleotide excision repair
CSV91_09460
03430 Mismatch repair
CSV91_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caer03032
]
CSV91_09460
03400 DNA repair and recombination proteins [BR:
caer03400
]
CSV91_09460
Enzymes [BR:
caer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSV91_09460
DNA replication proteins [BR:
caer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSV91_09460
DNA repair and recombination proteins [BR:
caer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSV91_09460
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSV91_09460
MMR (mismatch excision repair)
DNA ligase
CSV91_09460
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSV91_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DZR_2
RUBY_RBDX
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ATP54735
UniProt:
A0A2D1TZD6
LinkDB
All DBs
Position
2185589..2187817
Genome browser
AA seq
742 aa
AA seq
DB search
MEQSSLFGDGVDIDTETPASADAAAPADAHAQAAARAAELRHELDYHAYRYYMLDAPEIT
DAAFDKMLVELQEIEAAYPDLVTPDSYTQRVGGYVSEQFTPVTHMARMYSMDDAMDLDEL
DAWLQRTEDALGAGSVTYTCELKIDGLGVALTYQNGTFVRAATRGDGTTGEDVSLNVRTI
KDVPMHLSEAALAHMGAERERTIEVRGEVYMPKGSFVRLNDGADAEGRDPFANPRNAAAG
SLRQKDPKVTARRDLATFIYAIADTDPLHVHSQREFLDWLRSAGFSVNPNVARCATPAEV
HEFCAQALEHRGDLDYDIDGVVVKVDSFQQQLDLGFTARAPRWAIAFKFPPEEKQTVLRE
IRIQVGRTGVLTPVAEFDPVTVAGSTIARATLHNIDEIRRKNVREGDTIIVHKAGDVIPE
VVGPVLDKRPADSVDWHMPEVCPVCGSPVVHEDGEVAYRCVSIDCPAQLKERLLHWVSRG
CMDVDGLGDEIVDKMIAAGLIHDVADFYQLTVDDIAGLDTGRVYASSNSKKGVKKGDPIP
VGLKTAEKIIAELNKSKSQPLGRVLFALGIRHVGKSVGEVIAERFLSIDKLILASEEGIA
ECEGIGPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADA
QPLAGLTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQL
GVPVLDEDALEQILATGQVPEA
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggagcaatcgagcctgtttggtgacggcgtggacatcgataccgaaacgcccgcgagc
gcggatgccgctgcaccggccgacgcccatgcccaggccgccgcgcgcgcggctgagttg
cgccacgagctcgattaccacgcctatcgctactacatgctcgacgcgcccgagatcacg
gacgccgcctttgacaaaatgctcgttgagctgcaggagatcgaggcggcctatcccgac
ctggtgacgcccgacagctatacccagcgcgtgggcggatacgtgagcgagcagtttacg
ccggtcacgcacatggcacgcatgtattccatggacgatgccatggacctggacgaactc
gacgcgtggctccagcgcaccgaggacgcgctcggtgccggtagcgtcacctatacctgc
gagcttaagatcgacggtctgggcgtggcgcttacctaccaaaacggcacctttgtgcgc
gccgccacgcgcggtgacggcaccacgggcgaggacgtgtcgctcaacgtccgtaccatc
aaggacgtgcccatgcatctgtccgaggcggcgctcgcccacatgggtgccgagcgcgag
cgtaccatcgaggttcgtggcgaggtctacatgcccaagggcagctttgtgcgcctgaac
gacggggccgatgccgagggccgcgacccctttgccaacccgcgcaacgccgccgccggc
agcctgcgccaaaaggatcccaaggtcacggcgcgccgcgacctggctacctttatctac
gccatcgccgataccgacccgctgcatgttcacagccagcgcgagttcctcgattggctg
cgtagcgccggttttagtgtcaaccccaacgtggctcgttgcgccacgccggccgaggtc
cacgagttctgcgcccaggccctcgagcatcgcggtgacctggattacgacatcgatggc
gtggtcgtaaaggtcgacagcttccagcagcagctcgacctaggttttaccgcacgtgcg
ccgcgctgggccatcgcctttaagttcccgcccgaggaaaaacagactgtcctgcgcgag
atccgcatccaggtgggccgcaccggcgtgctcacgccggtggccgagttcgacccggtg
acggtcgccggctccaccatcgcgcgcgccacgctgcacaacatcgacgagatccgtcgc
aaaaacgtgcgcgagggcgacactatcatcgtgcacaaggcaggcgacgtgatccccgag
gtcgtgggcccggtactcgacaagcgcccggctgattcggtcgactggcacatgcccgag
gtttgccccgtgtgcggcagccccgtggttcacgaggatggcgaggtggcctaccgctgc
gtgtccatcgactgccccgcacagctcaaggagcgcctgctccactgggtgagccgcggc
tgcatggacgtggacggcctgggcgacgaaatcgtcgacaagatgatcgccgccggccta
atccacgatgtcgcggacttctaccagctcacggtcgacgacatcgccggactggacacg
ggccgcgtgtacgccagctctaacagcaaaaagggcgtcaagaagggcgaccccatcccg
gtgggtctcaagacggccgaaaaaatcatcgccgagctcaacaagtccaagagccagccg
ctcggtcgtgtgctgtttgccctgggcatccgccacgtgggcaagagtgtgggcgaggtc
attgccgagcgattcctgtcgattgacaagctcatcttggcgagcgaagagggcatcgcc
gagtgcgagggcatcggtcccaagattgcggcgagcgtcaagcagttcctggccgtgccc
gagaaccttgccgtgctggagcgcctgcgccaagcgggtctttcgctcgaggtcgacttg
ggcgccgcgcacgcgcaagctgcagctgatgccggcgtagcgggcgagctcgccgatgca
caaccgctcgcgggcctgaccttcgtgctcaccggcacgctcgtcaaccgcacccgcgac
gaggcgggcgcggcgctcaaggtgcttggcgccaaggtttcgggcagtgtgtcaaagaag
acgagctatctggttgccggccccaaagcgggctccaagctcaccaaggccgagcagctg
ggtgtacctgtgctggacgaggacgcgctcgagcagatcctggcgactggtcaggtgcca
gaggcgtaa
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