Costertonia aggregata: HYG79_00580
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Entry
HYG79_00580 CDS
T06693
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
cagg
Costertonia aggregata
Pathway
cagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG79_00580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cagg03019
]
HYG79_00580
03009 Ribosome biogenesis [BR:
cagg03009
]
HYG79_00580
Messenger RNA biogenesis [BR:
cagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYG79_00580
Ribosome biogenesis [BR:
cagg03009
]
Prokaryotic type
rRNA helicases
HYG79_00580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QLG43903
UniProt:
A0A7H9AKN0
LinkDB
All DBs
Position
115910..117691
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AA seq
593 aa
AA seq
DB search
MTKFEALGLDKALLDAVADMGFETPSEVQEKAIPILLKDETDLVALAQTGTGKTAAFGFP
LIQKIDSSSKTTQGLILSPTRELCLQITNEMQAYSKYVKGLNTVAIYGGASITEQARQIK
RGAQIVVATPGRMKDMIGRGLVDISKIDYCILDEADEMLNMGFYEDIKDILSGTPKEKST
WLFSATMPKEVSVIAKKFMHNPQEITVGAKNAGTSTVQHEYYVVGGRDRYPALKRLADAN
PDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIHAIEKK
IQQDFIANKIPTGIEICEIQLYHLANKIKDTEINKDVENYLPAINDVLDGIDRDELIKKI
VSVEFTRFSNYYNKTADLNSAGSGERGEKGQRGAAMPTNGSVRYFINVGEKDGYDWMSLK
DFIRDTVGLGKEDVFKVDVKESFSFFNTDAEATEKILSTFTEFKDNGRFVNVEVSKNPGG
GGRRGGSGGGKGRDRGRSRNRDKGGQGKRRSRSFSGSEKSSGKRRSKKRDGFY
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcactagggctagacaaagctctactggatgctgttgccgatatg
ggttttgaaaccccatcggaagtacaggaaaaagcaatcccgattttattgaaagatgaa
accgatctggtcgcactagcccaaacgggaacaggaaaaaccgcagcctttggttttccc
ctaatccaaaaaatagacagttcaagtaaaaccacgcaaggcttgatactctcccctacc
cgagaactctgtttgcagatcaccaatgaaatgcaagcatattcaaaatatgtaaaggga
ttgaacaccgtagcgatttacggcggagcgagcattaccgagcaagccaggcaaataaaa
cgcggtgcacagatagttgtagctaccccaggccgtatgaaagatatgatcggccgtggt
ctcgttgatatctccaagatagattattgtattttggatgaggccgatgaaatgttgaac
atgggcttctacgaagatataaaggatatcctttcgggcacgcccaaagaaaaatctaca
tggttattttcggcgaccatgcccaaagaagtatcggttatcgccaagaaatttatgcac
aacccacaggaaatcaccgttggggcaaaaaatgccggtacatcaaccgtgcagcatgaa
tattatgtggtcggcggccgcgaccgttaccctgcactcaaaagattggcagatgcaaat
ccggacattttctcggttgtgttctgtagaactaaacgcgatacgcaaagagtagcggaa
aaattgatagaagatggctataatgccggggcacttcatggggatttgagccaaaaccaa
agagatttggtgatgaacgcctttcgtaagaaacaaatacagatgttggtagcgacagat
gttgccgcacgaggtatcgacgtagatgatattactcatgtaatcaactatcaactgccc
gatgagatagaaacttatacgcataggagtggccgtacgggaagagccggaaaatcgggt
atttcaatggtcattgttacccgtagcgaaatgcgtaagatacatgccatagaaaagaag
atacagcaagactttatcgcaaacaaaattcctaccggtatcgagatttgtgagatacaa
ctatatcatctagcgaacaagataaaggataccgaaataaataaggatgtagaaaattat
ctacctgcgattaatgatgtcttagacggtatagaccgtgatgagctcattaaaaaaata
gtatcggtagaatttacacgtttttcgaactattataacaaaaccgcagacctaaattct
gccggttcaggcgagcgaggcgaaaaaggacagcgtggcgcggctatgccgaccaatggc
tcggttcgttattttataaatgtaggggaaaaagatggttatgactggatgtcgctcaaa
gattttatccgtgacactgtagggctaggaaaagaagatgtgttcaaagttgatgtcaaa
gaaagcttttcgttcttcaataccgatgccgaagcaacagaaaaaattctgtcgaccttt
acagaattcaaggataatggtaggttcgtgaacgttgaagtctccaaaaaccccggcgga
ggtggcagacgtggcggaagtggcggcggaaaaggccgagatagagggcgaagtcgtaac
agggacaaaggcggacaaggaaaacgaaggagccgaagcttctctggcagcgaaaaaagc
tccggaaagcgaagaagcaaaaaaagggatggattttattag
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