KEGG   Clostridium autoethanogenum: CAETHG_1954
Entry
CAETHG_1954       CDS       T02883                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cah  Clostridium autoethanogenum
Pathway
cah03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cah00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CAETHG_1954 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cah03021]
    CAETHG_1954 (rpoC)
   03400 DNA repair and recombination proteins [BR:cah03400]
    CAETHG_1954 (rpoC)
Enzymes [BR:cah01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CAETHG_1954 (rpoC)
Transcription machinery [BR:cah03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CAETHG_1954 (rpoC)
DNA repair and recombination proteins [BR:cah03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CAETHG_1954 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: AGY76173
UniProt: U5RXS4
LinkDB
Position
complement(2083899..2087435)
AA seq 1178 aa
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETQLLKKQLLTEKEYREAADKYGEQNFVAGMGAESVKKLL
EEIDLDQLSVTLKEDLKSSTGQKKVRIIRRLEVVESFRKSGNKPDWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPK
EMALELFKPFVMKKLVESGLAHNIKSAKRMVERVQTQVWDVLEEVISDHPVILNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNI
LKPSDGKPVVVPTQDMVLGSYYLTIEKDGAKGEGRIFSSPDEVIMAYQLKQVDINAKIKV
RLTKVKDGKTISGIIDATPGKIIFNESIPQDLGFVDRSKPENEFKLEIDFLVAKKNLGKI
INKCYMKHGATKTSIMLDKIKARGYHYSTISGITVSTSDMVVPEAKKRLLGEADAAVDKI
EKMYRRGFISEEERYQRVIEKWTKTTEDVADALMDNLDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTHEGYDVSEIKEGNEVIESLAERLTGRYSAEDIKDPKTGEIIIP
KDVYMDPKIAEKIEASGIKKVKIRSVFTCKSKHGVCAKCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRSVSIVMDTGEEVSYDIPFGSRLKVSNGDTISAGDEITEGSVNPHDILRIKGVQGAK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEESGDTELLPGTMIDMFDFEEANE
KVEANGGEPAKGRVALLGITKAALATESFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSVRINTEDKSEEKQVSDEAEV
NT seq 3537 nt   +upstreamnt  +downstreamnt
ttgtttgaattaaataattttgatgcacttcaaataggcttagcttcaccagaaaaaata
agagaatggtcaagaggtgaagtaaagaaaccagaaacaataaattatagaacattaaaa
cctgaaagagatggactgttctgtgaaagaatttttggaccaactaaagattgggaatgt
cactgtggtaagtataagaggataagatacaaaggtatagtttgcgataggtgcggtgta
gaggtaactaaggcaaaggttagaagagagagaatgggacatattgagcttgcagctcct
gtatcccatatatggtactttaaaggaataccatcccgaatgggattgatcttggatatg
tcacctagagctcttgaaaaagtactatattttgcgtcttacgttgttttagatccaaaa
gaaactcaactgttaaaaaagcaacttttaactgaaaaagaatatagggaagctgcagac
aaatatggtgagcaaaattttgtagcaggtatgggtgctgaatctgttaagaaactatta
gaagaaatagacttagaccagttatctgtaaccctaaaagaagacctaaagagcagtaca
gggcaaaaaaaggtaaggataattagaagattggaagtagttgaatcttttagaaaatct
ggtaataagcctgattggatgattatagatgtaatacctgtaatcccacctgatttgaga
cctatggttcaattagatggaggaagatttgctacatcagatttgaatgatctttataga
agagtaataaatagaaataataggcttaaaaaattattagatttaggtgcgccggatata
atagttagaaatgaaaagaggatgcttcaggaagctgtagatgctcttatagataatggt
agacgtggaagagcagtaacgggacctggaaatagacctttaaaatcattatctgatatg
ttaaaaggtaaacaaggtagatttagacaaaatttgctgggaaaacgtgtagattactct
gggcgttctgttatagtagttggacctgaacttagaatgtatcaatgtggtctgcctaaa
gaaatggcacttgaattatttaagccatttgttatgaagaaattagtagaaagtggctta
gcacacaatattaaaagtgcgaagagaatggtagaaagagtacagactcaagtatgggat
gtattagaagaagtaatatcagaccatccagtaattttaaatcgtgctccaactctccat
agattaggaattcaggcatttcagcctgtacttgtagagggtagagctataaaacttcat
ccattagcatgtactgcatataatgcagactttgatggagaccaaatggcggtacatgtt
cctctatctgttgaagctcaatcagaggctagatttttaatgcttgctgcacataatata
ttaaaaccttcagatggaaagccggtagttgtgcctacacaggatatggtacttggttca
tactatttaactatagaaaaggatggagctaaaggagaaggcagaattttttcttcaccg
gacgaagtaataatggcatatcagttaaaacaggttgatattaatgccaaaataaaggtt
agacttactaaggttaaggacggaaaaactataagtggtataattgatgccaccccaggt
aaaataatatttaatgaatccatacctcaagatttgggatttgtagatagaagtaaacct
gagaacgagtttaaacttgaaattgattttcttgtagctaagaaaaacttaggtaagata
ataaataagtgctatatgaagcatggtgctactaaaacttccataatgcttgataaaata
aaagctagaggatatcattattctactataagtggtataacagtttccacttcagatatg
gtggttccagaagctaaaaaaaggctcttgggcgaagcagatgcagcagtagataaaata
gaaaaaatgtatagaagaggatttatatcagaggaagaaagatatcaaagagttattgag
aaatggactaaaactacagaagatgttgcagatgcacttatggataatctagataaattc
aatccaatatttatgatggcggattcaggagctagaggatctaaaagtcagatcaagcag
cttgcaggtatgagaggacttatggcaaatccttcaggaaagataatagaacttcctata
agagcatctttcagggaaggtttggatgtactagaatatttcatatcaactcacggagct
agaaaaggtaatgcagatactgcattaaagactgctgattctggttatcttacaagaagg
cttgtagatgtaagccaggatgttatagtaagacaagaagattgtggaactcacgaagga
tacgacgtttctgaaataaaagagggaaatgaagttatagaaagtttggcagaaagactt
actggtaggtattctgctgaagatattaaagatcctaaaactggagaaataataatacca
aaagatgtttatatggatccaaaaatagctgagaaaatagaagcttctggaattaaaaaa
gtaaagattaggtccgtatttacctgtaagtcaaaacatggagtatgtgcaaagtgttac
ggtatgaatatggctactgcaaagaaaattgatataggagaggctgtaggtataatagca
gctcaaagtataggagagccaggtacacagctcactatgagaactttccatactggagga
gttgcaggatctgatataactcaaggtcttcctagagttgaagaattatttgaagctaga
aaaccaaaggggcttgctatagtaagtgaggtttcaggtactgtaaaaatggaagaaacc
aaaaagaagagaagtgtttccatagttatggatactggagaagaagtaagctatgatata
ccgtttggttcaagacttaaagtatctaatggagatacaataagtgctggagatgagata
acagaaggttctgtaaatccacatgatattttaagaataaaaggtgttcagggagctaaa
aattatcttttgtctgaagttcaaaaagtttacagacttcagggtgttgatataaatgat
aagcatctagaagtagtaataagacagatgacaagaaagattaaaatagaggaatcggga
gatacagaattgcttccaggaactatgattgatatgtttgattttgaagaggctaatgaa
aaagtagaagctaatggtggagaaccagctaaaggaagggtagctttacttggtataact
aaagcagcacttgcaactgaatctttcctttctgcagcgtcgttccaggaaactacaaga
gttcttacagatgcagctataaagggcaaaatagatccattactaggattgaaggaaaat
gtaattataggtaaacttataccagcaggaacaggtatgaccaggtataggtctgtaaga
attaatacagaagataaatctgaagaaaaacaggtaagtgatgaggcagaagtgtag

DBGET integrated database retrieval system