Clostridium autoethanogenum: CAETHG_1954
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Entry
CAETHG_1954 CDS
T02883
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cah
Clostridium autoethanogenum
Pathway
cah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAETHG_1954 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cah03021
]
CAETHG_1954 (rpoC)
03400 DNA repair and recombination proteins [BR:
cah03400
]
CAETHG_1954 (rpoC)
Enzymes [BR:
cah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAETHG_1954 (rpoC)
Transcription machinery [BR:
cah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAETHG_1954 (rpoC)
DNA repair and recombination proteins [BR:
cah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAETHG_1954 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AGY76173
UniProt:
U5RXS4
LinkDB
All DBs
Position
complement(2083899..2087435)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETQLLKKQLLTEKEYREAADKYGEQNFVAGMGAESVKKLL
EEIDLDQLSVTLKEDLKSSTGQKKVRIIRRLEVVESFRKSGNKPDWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPK
EMALELFKPFVMKKLVESGLAHNIKSAKRMVERVQTQVWDVLEEVISDHPVILNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNI
LKPSDGKPVVVPTQDMVLGSYYLTIEKDGAKGEGRIFSSPDEVIMAYQLKQVDINAKIKV
RLTKVKDGKTISGIIDATPGKIIFNESIPQDLGFVDRSKPENEFKLEIDFLVAKKNLGKI
INKCYMKHGATKTSIMLDKIKARGYHYSTISGITVSTSDMVVPEAKKRLLGEADAAVDKI
EKMYRRGFISEEERYQRVIEKWTKTTEDVADALMDNLDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTHEGYDVSEIKEGNEVIESLAERLTGRYSAEDIKDPKTGEIIIP
KDVYMDPKIAEKIEASGIKKVKIRSVFTCKSKHGVCAKCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRSVSIVMDTGEEVSYDIPFGSRLKVSNGDTISAGDEITEGSVNPHDILRIKGVQGAK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEESGDTELLPGTMIDMFDFEEANE
KVEANGGEPAKGRVALLGITKAALATESFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSVRINTEDKSEEKQVSDEAEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcacttcaaataggcttagcttcaccagaaaaaata
agagaatggtcaagaggtgaagtaaagaaaccagaaacaataaattatagaacattaaaa
cctgaaagagatggactgttctgtgaaagaatttttggaccaactaaagattgggaatgt
cactgtggtaagtataagaggataagatacaaaggtatagtttgcgataggtgcggtgta
gaggtaactaaggcaaaggttagaagagagagaatgggacatattgagcttgcagctcct
gtatcccatatatggtactttaaaggaataccatcccgaatgggattgatcttggatatg
tcacctagagctcttgaaaaagtactatattttgcgtcttacgttgttttagatccaaaa
gaaactcaactgttaaaaaagcaacttttaactgaaaaagaatatagggaagctgcagac
aaatatggtgagcaaaattttgtagcaggtatgggtgctgaatctgttaagaaactatta
gaagaaatagacttagaccagttatctgtaaccctaaaagaagacctaaagagcagtaca
gggcaaaaaaaggtaaggataattagaagattggaagtagttgaatcttttagaaaatct
ggtaataagcctgattggatgattatagatgtaatacctgtaatcccacctgatttgaga
cctatggttcaattagatggaggaagatttgctacatcagatttgaatgatctttataga
agagtaataaatagaaataataggcttaaaaaattattagatttaggtgcgccggatata
atagttagaaatgaaaagaggatgcttcaggaagctgtagatgctcttatagataatggt
agacgtggaagagcagtaacgggacctggaaatagacctttaaaatcattatctgatatg
ttaaaaggtaaacaaggtagatttagacaaaatttgctgggaaaacgtgtagattactct
gggcgttctgttatagtagttggacctgaacttagaatgtatcaatgtggtctgcctaaa
gaaatggcacttgaattatttaagccatttgttatgaagaaattagtagaaagtggctta
gcacacaatattaaaagtgcgaagagaatggtagaaagagtacagactcaagtatgggat
gtattagaagaagtaatatcagaccatccagtaattttaaatcgtgctccaactctccat
agattaggaattcaggcatttcagcctgtacttgtagagggtagagctataaaacttcat
ccattagcatgtactgcatataatgcagactttgatggagaccaaatggcggtacatgtt
cctctatctgttgaagctcaatcagaggctagatttttaatgcttgctgcacataatata
ttaaaaccttcagatggaaagccggtagttgtgcctacacaggatatggtacttggttca
tactatttaactatagaaaaggatggagctaaaggagaaggcagaattttttcttcaccg
gacgaagtaataatggcatatcagttaaaacaggttgatattaatgccaaaataaaggtt
agacttactaaggttaaggacggaaaaactataagtggtataattgatgccaccccaggt
aaaataatatttaatgaatccatacctcaagatttgggatttgtagatagaagtaaacct
gagaacgagtttaaacttgaaattgattttcttgtagctaagaaaaacttaggtaagata
ataaataagtgctatatgaagcatggtgctactaaaacttccataatgcttgataaaata
aaagctagaggatatcattattctactataagtggtataacagtttccacttcagatatg
gtggttccagaagctaaaaaaaggctcttgggcgaagcagatgcagcagtagataaaata
gaaaaaatgtatagaagaggatttatatcagaggaagaaagatatcaaagagttattgag
aaatggactaaaactacagaagatgttgcagatgcacttatggataatctagataaattc
aatccaatatttatgatggcggattcaggagctagaggatctaaaagtcagatcaagcag
cttgcaggtatgagaggacttatggcaaatccttcaggaaagataatagaacttcctata
agagcatctttcagggaaggtttggatgtactagaatatttcatatcaactcacggagct
agaaaaggtaatgcagatactgcattaaagactgctgattctggttatcttacaagaagg
cttgtagatgtaagccaggatgttatagtaagacaagaagattgtggaactcacgaagga
tacgacgtttctgaaataaaagagggaaatgaagttatagaaagtttggcagaaagactt
actggtaggtattctgctgaagatattaaagatcctaaaactggagaaataataatacca
aaagatgtttatatggatccaaaaatagctgagaaaatagaagcttctggaattaaaaaa
gtaaagattaggtccgtatttacctgtaagtcaaaacatggagtatgtgcaaagtgttac
ggtatgaatatggctactgcaaagaaaattgatataggagaggctgtaggtataatagca
gctcaaagtataggagagccaggtacacagctcactatgagaactttccatactggagga
gttgcaggatctgatataactcaaggtcttcctagagttgaagaattatttgaagctaga
aaaccaaaggggcttgctatagtaagtgaggtttcaggtactgtaaaaatggaagaaacc
aaaaagaagagaagtgtttccatagttatggatactggagaagaagtaagctatgatata
ccgtttggttcaagacttaaagtatctaatggagatacaataagtgctggagatgagata
acagaaggttctgtaaatccacatgatattttaagaataaaaggtgttcagggagctaaa
aattatcttttgtctgaagttcaaaaagtttacagacttcagggtgttgatataaatgat
aagcatctagaagtagtaataagacagatgacaagaaagattaaaatagaggaatcggga
gatacagaattgcttccaggaactatgattgatatgtttgattttgaagaggctaatgaa
aaagtagaagctaatggtggagaaccagctaaaggaagggtagctttacttggtataact
aaagcagcacttgcaactgaatctttcctttctgcagcgtcgttccaggaaactacaaga
gttcttacagatgcagctataaagggcaaaatagatccattactaggattgaaggaaaat
gtaattataggtaaacttataccagcaggaacaggtatgaccaggtataggtctgtaaga
attaatacagaagataaatctgaagaaaaacaggtaagtgatgaggcagaagtgtag
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