Citrobacter amalonaticus Y19: F384_21940
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Entry
F384_21940 CDS
T03934
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F384_21940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cama03021
]
F384_21940
03400 DNA repair and recombination proteins [BR:
cama03400
]
F384_21940
Enzymes [BR:
cama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F384_21940
Transcription machinery [BR:
cama03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F384_21940
DNA repair and recombination proteins [BR:
cama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F384_21940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKE61034
UniProt:
A0A0F6TYF7
LinkDB
All DBs
Position
4742816..4747039
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaaccagagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcatccccgacagctcacatctggttcctgaaatcactg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgacaaatctggaacgccagcagatcctg
actgaagaacagtatctggatgcgctggaagagttcggtgacgaatttgacgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactcagaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggcggcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctcctgcgaacggtgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgctaac
ggcgagttcgttgcgcacaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgttgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggtctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaaaaaacacgagatcatctctgaagcggaagcggaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctacaac
aaagttatcgatatctgggccgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaaccgaaaccgtgattaaccgtgacggcgtagaagagcagcaggtttccttcaac
agcatttacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctt
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgacgcgtcgtctg
gttgacgttgcacaggacctggtcgtcactgaagacgactgcggtaccctggaaggcatc
accatgacgccggttatcgaaggtggcgacgtgaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgactgcggaagacattctgaagccgggtacggcggacattctggttccacgc
aatacgctgctgcacgaacagtggtgtgacctgctggaagcgaactccgttgactctgtg
aaagtccgctctgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaataaaggtagcatccgtctg
agcaatgcgaagtcggttgtgaactccagcggtaaactggttatcacctcccgtaacact
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
tctgtgatggcgaaaggtgatggtgagcaggttgctggcggtgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcacggaagtgagtggttttgtccgcttcactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaactgaccggtctgtcttctctggtg
gttctggattccgcagaacgtactgcgggtggtaaagacctgcgtcctgcgctgaaaatc
gttgatgctcagggtaacgacgttctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtgtgccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggta
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtattcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgtggtgttcatgctgtaactcgttacatcgttaacgaagttcaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgaaagcgcaggtagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaatggcaaagtgggcgca
acgttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccggcgggt
accggttatgcgtaccatcaggacaggatgcgtcgccgtgctgcgggtgaactcccggcc
gcaccgcaggtgactgcagaagatgcctccgccagcctggcagaactgctgaacgcaggt
ctgggtggttctgacaacgactaa
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