KEGG   Capsicum annuum: 107860093Help
Entry
107860093         CDS       T04646                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cann  Capsicum annuum
Pathway
cann03030  DNA replication
cann03410  Base excision repair
cann03420  Nucleotide excision repair
cann03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107860093
   03410 Base excision repair
    107860093
   03420 Nucleotide excision repair
    107860093
   03430 Mismatch repair
    107860093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cann03032]
    107860093
   03400 DNA repair and recombination proteins [BR:cann03400]
    107860093
Enzymes [BR:cann01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107860093
    6.5.1.6  DNA ligase (ATP or NAD+)
     107860093
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107860093
DNA replication proteins [BR:cann03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107860093
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107860093
DNA repair and recombination proteins [BR:cann03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107860093
   NER (nucleotide excision repair)
    Other NER factors
     107860093
   MMR (mismatch excision repair)
    Other MMR factors
     107860093
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DRMBL RMMBL
Motif
Other DBs
NCBI-GeneID: 107860093
NCBI-ProteinID: XP_016560814
UniProt: A0A1U8FYL5
LinkDB All DBs
Position
2
AA seq 1423 aa AA seqDB search
MSSDAGTLTLNSTTLYTTALNSGSGKSSSRSLSLSLPLPPIPSSIPQPKLIPKTRFIIDG
FRNAGDFSVSYFLSHFHSDHYAGLSSNWSKGIIFCSFITANLLIKVLNVPAQYVVALPLS
ELVLIDGSEVYLIDANHCPGAVQFLFKVPVSNGKFERYVHTGDFRYRDVMKLEPVLNAFV
GADAVFLDTTYCHPKFIFPSQEESIDYIVGVIEKCRVENEGSLKNILFLIATYVIGKEKI
LVEVSRRCRRKIHVDGRKMEVLEVLGHGEDGVFTTVDSETDVHVIGWNVLGETWPYFKPH
FEKMDKIMNEKGFSKVVGFVPTGWTYEVKRNKFSVRKRDSLEIHLVPYSEHSNYDELRQY
VKFLKPKHVIPTVGTDVEKLDSKHANAMRKHFAGLVDEMANKQEFLMGFHRSVQGEEDVD
VKKSGLALVSLTVQENTNVSAHAHSLVCSIKQENEDTSSDPKSFGAADTDTVIGSSFCQG
EPVSQGLEKISEGDIEELLKEIQGCLPTWVTKGQMLDLLSISGKNVVDAVTNFYEHETEY
REQVTASNAVTSSFEANSANESALPPKPCLVKSLPQGETTTSSKTVKLPIMDSSSSKKFS
PGKRKRSTGNKILKKAKGLASMESGGPKQCTITTFFSKTVPLSLHNGNSEADSKNSHNDN
NMSINASAEPYKEETDQFIQIVNGDESLRSYATTVLVKTKGDISMALDIYFSEYKDIGET
NEEEISKTNKLVHPQCAKEVFPSSRDAKLPKILGEDDADLPLCGVPIADNAVNYVSLPPE
KYSPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAV
YLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSRVRELYNSLGDLGDVAQLCRQTQS
LLAPPVALTVRGVYSALRRISLQAGSGSAIRKKSLIVKLMCSCREKEMKFLVRTLVRNLR
IGAMMRTVLPALAQAVVFNSIPHEGLVDNLKDCLQRLSAEAVEAYNILPSLDVLVPSLME
KGVEFSSNSLSMAPGIPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLADG
SVRVFSRNGDETTSRFPDLVNIITESCGPRGVTFILDAEVVAIDRQNGSKLMSFQELSSR
ERGSKGSIIALDKIKVDICIFVFDIMFANGEQLLNLPLRQRRKYLKDLFGDGKVGYFEYA
TEMTVEDNDSCADDEATLARMNSFLNDALNSSCEGIMVKSLDLDAGYTPSKRSDAWLKVK
RDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEYQSVCRVMSGFSDSFYV
EMRDFFDADKISQKKPPYYRTAEAPDMWFSPEVVWEIRGADFTVSPVHHAAIGLVHPSRG
ISVRFPRFIRCLSDRKPEECSTSADIAEMFHSQTRKMDVNFEK
NT seq 4272 nt NT seq  +upstreamnt  +downstreamnt
atgtcctccgacgccggaaccctaaccctaaactcaaccactctatacacaaccgctctc
aactccggctccggtaaatcctcatcacgttcactctccctctccctccccctcccccca
atcccttcttcaatcccccaaccaaaactcatcccaaaaactcgctttatcatcgacggt
ttcagaaacgccggcgatttctccgtttcatacttcctctctcatttccactccgatcac
tatgctggcttgtcttctaattggtctaaaggcatcattttctgttccttcattactgct
aaccttctgatcaaagtcctcaatgttccggcgcaatatgtagtggcgttaccgctctcc
gaattggttttgatagacggttctgaggtttatctcattgatgctaatcattgtcctggt
gctgtgcaatttttgttcaaagttccagttagtaatggcaaatttgaaaggtacgttcac
acaggcgattttcgttatcgtgatgtcatgaaattagagcctgtattgaatgcatttgtt
ggtgctgatgcggtgtttttggatactacttattgtcatccgaaatttatattccctagt
caagaggagtcgattgattatatagttggagttatagagaaatgtagagttgagaatgag
ggttcattgaaaaatatcttgtttcttattgctacttatgtaattgggaaagagaagatt
ttggtggaggtttcacggaggtgtcggagaaagattcacgtggatggcagaaaaatggaa
gttttggaagtattaggtcatggggaggatggggtgtttactactgttgattctgaaact
gatgtgcatgttattgggtggaatgtattgggtgagacttggccatattttaaacctcat
tttgaaaaaatggataagatcatgaatgagaaaggattttccaaggttgttggttttgtc
cccacaggttggacttatgaagttaagcggaataagttttcagtgagaaagagagattca
ttggagatacatcttgttccttatagtgaacattcaaattatgatgagcttagacaatat
gtgaagtttttgaaaccaaagcatgttattccaacagtaggtacagatgttgagaagctg
gatagcaaacatgcaaatgccatgcggaagcattttgctggcttggtggatgagatggcc
aacaagcaagaatttctaatgggctttcatcgttctgtccaaggagaggaggatgtagat
gtgaaaaaatctggtcttgctttagttagtctcaccgtgcaagaaaacacaaatgtatct
gctcatgctcattctttagtctgtagcatcaagcaagaaaatgaggatacttcttcagat
cctaaaagcttcggtgctgctgatacggatactgttattggttcctcattttgtcaagga
gaacctgtgtcgcaaggtttagaaaaaataagtgaaggtgatatagaggaactactaaaa
gaaattcaaggatgtttacccacttgggtcactaaaggtcagatgttggatttacttagt
atttcgggtaaaaatgttgttgacgcagtcacaaacttttatgaacatgaaacagaatat
cgtgaacaggtcaccgccagtaatgctgttacctcttcgtttgaggcaaactcagcaaat
gagtctgcattgcctcccaaaccatgtcttgttaaaagcctgccccagggcgagacaact
acatcaagtaagaccgttaaactacccatcatggacagttccagtagcaaaaaattttct
cctggtaaaaggaagagaagtactggaaacaagatattgaagaaagctaaaggacttgca
agtatggaatctggtgggccgaagcaatgtactataacaacgttcttcagtaaaacggtg
cctctttctttgcacaatggaaacagtgaagctgatagtaaaaattcccacaatgataac
aacatgtcaataaatgcctctgctgagccttataaagaggaaactgatcagtttattcag
attgtgaatggggatgagtcattaagaagttatgctaccacagtgctagtgaagactaaa
ggagacataagtatggcacttgatatttatttttcagaatacaaagatataggagagacc
aatgaagaagagatttctaaaacaaacaaattggtgcaccctcaatgtgctaaggaggtt
tttccgtcttccagagatgctaaattgcccaaaatattaggtgaagatgatgccgatttg
ccattgtgtggagttccaattgcagataatgctgtaaattatgtatcacttccccctgag
aaatattctcctgtggaacatgcttgctggagtaaggggcaggctgctccatacatacat
cttgcacgaacttttgaattggtaaaggaagaaaaagggaagataaaagcaacatcaatg
ttgtgcaatatgtttcggagcttgctagccttgtctccagaggatgtgcttcctgcagtg
tacttgtgcacaaacaagatagctcctgaccatgaaaatatggaattgaatattgggggt
agtacagttgtagcagcactggaggaggcgtgcgggacaaagaaatcaagagtacgagaa
ctatacaacagcctcggtgatctcggtgatgttgctcaactttgccgacaaacacaatca
ttacttgctcctccagtggcacttacagttaggggtgtatactctgctcttagaaggata
agcttgcaagcaggtagtgggagcgccatccgaaagaaaagccttatcgtcaaactcatg
tgttcatgtagagagaaggagatgaagtttcttgtgagaactttggttcggaatttgcgt
attggggccatgatgagaactgttcttcctgctttagctcaagctgttgtgttcaattct
attcctcacgaaggactggtcgataacctgaaagattgtctgcagcgactttcagcagaa
gcagttgaagcatataacatccttcccagcttggatgtacttgttccttccttgatggag
aagggggttgagttttcttcaaattcattgtcaatggctccaggcatacccatcaaacca
atgcttgcaaagattactaatggcgtccctcaagtgctgaagctctttcagaacaaagcc
tttacatgtgaatacaaatatgatggtcagcgagctcagattcataaattagctgatggt
tcagtccgtgtattttcaaggaatggggatgaaacaacatcaagattcccggatttggtt
aacataattacagaatcatgtggtcccagaggagtaacatttatcttggatgcagaggtt
gttgcaattgatagacaaaatggttcaaagctcatgtcgttccaagaactatcttcacgt
gagagagggtccaaaggttccatcattgcattagataaaattaaggttgatatatgcatt
tttgttttcgatatcatgtttgctaacggagaacaattgttgaatctgccgctccgtcaa
agacgaaaatatttgaaggatttatttggtgacggcaaagtaggttatttcgagtacgct
acagaaatgactgtagaggacaatgattcttgtgcagatgatgaagccacactggctagg
atgaacagttttcttaatgatgcattaaattcttcatgtgaagggatcatggtgaaatct
cttgatttagatgctgggtacacaccatcaaagcgctctgatgcttggttaaaggtcaag
agagactatgttgaaggattaaatgattctctggacttggttccaattggtgcttggtac
ggaaatggaagaaaagcaggatggtatagtcctttccttatggcgtgctacaatcctgac
acagaggaatatcagagtgtctgccgggtcatgtctgggttttctgattccttctacgtg
gagatgagagacttctttgatgcggacaaaatctcccagaaaaagcctccctactatcga
actgcagaagctccagatatgtggttttctccagaagttgtgtgggagataaggggtgct
gacttcacggtgtcaccagtgcatcatgcagccattggtttagtccatccatctcgtggt
atttctgtcagattccctaggttcatccggtgtttgtcagatagaaaacctgaggaatgt
agcacatctgcagatatagctgagatgttccattctcagactagaaaaatggatgtgaat
tttgaaaaatag

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