Capsicum annuum (peppers): 107873013
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Entry
107873013 CDS
T04646
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107873013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107873013
03036 Chromosome and associated proteins [BR:
cann03036
]
107873013
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107873013
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107873013
PBAF complex
107873013
GBAF(ncBAF) complex
107873013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
107873013
NCBI-ProteinID:
XP_016575188
LinkDB
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Position
6:complement(170792124..170811402)
Genome browser
AA seq
791 aa
AA seq
DB search
MPASSSETRNRWRKRKRESLISRKMKNQNDEDGFEDEEDEEEIEQQEMVDDLQNPNNSVD
RSYTNSVVELVSESKERISEFPMVVRRAVTRPHSSVLNIVAIEKAGQSGESKQNGGVVLE
NLSYGQLQALSAVPVDHHALLSDERGEGSGSGSYVITPPQILPGRGVVKHYGSAGRIHVV
PMHADWFSPNTVHRLERQVVPHFFSGKSAEHTPEKYMECRNCIVAKYMESPVKHLSVDDC
HGIVAGISADDVTRIARFLDHWGIINYCAVPPKDEAPKDGTYLYEDSNNDICVPVAGLKS
IDSLVQFDKPKCRLKAKDIYPELVRDCDDDSDFDNSIREVLSEIKCNCCSRPVSLAYYQS
QKEIDILLCLDCFHEGRFVAGHSSLDFVKVSSMKDYGDLDGDSWTDQETLLLLEGMQRYK
ENWNQIAEHVGTKSKAQCILHFVRLPLDGASLDNIELPGASGPSSSSTGEDPNKSHSILN
GNLAGPSTENFHPDSKFPFENCGNPVMSLVAFLASSVGPRVAAACAHASLAALSKDDTLG
ARRNMTQMDGSTANNGTSVGRMPGKNGSPHGDVGNSHQLKDEKSGGQGPHDTGGAPLSTE
SVRAAAKAGLAAAAIKSKLFADHEEREIQRLSANIVNHQLKRLELKLKQFAEVETLLMKE
CEQLERTRQRFTAERSRMISQPGSIRVSRPMGVSGAGAAVVSNAGNSRQQQVVSAPQQQG
FVSGYGNQQQMHPQMSFLQQQGMYGFGPRLPLSAIHPSSSTPGMFNASASSQPALSHSML
RPVSGTKSGLG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttcctcctcagagacgaggaatagatggaggaagcggaaaagggaaagttta
atttcgaggaaaatgaagaatcagaacgatgaggacgggttcgaagacgaggaagatgag
gaagaaattgagcaacaagagatggttgatgacctccaaaaccctaataattcagtggat
cgaagttatacaaactccgttgttgagttggtgtcggaaagtaaggagaggattagtgag
tttccgatggtagtgagacgtgctgtaacgcggccgcattcatccgtgttgaatattgtg
gctatagagaaggctgggcagagtggggagagtaagcagaatggtggtgtggtgttggag
aatttgtcgtatgggcagcttcaggcactttcggctgtgcctgtagatcatcacgcgttg
ttgagtgatgaaagaggagaagggagtgggagtggttcgtatgtgattactccgccgcag
atattgcctggtcgcggtgttgttaagcattatggtagtgcaggtcgaattcatgttgtg
cctatgcacgcagattggttttcacctaatactgtgcacagattagaaagacaagtggta
ccacattttttctctggaaagtcagctgaacatacacccgaaaaatacatggaatgtaga
aattgtattgttgcaaagtatatggagtctcctgtaaagcacttgtcagttgatgattgc
catgggatagtagctggcatcagtgctgatgatgtaactcgaattgcaagatttcttgat
cattgggggatcatcaactactgtgctgttcctcctaaagatgaggcaccaaaagatggc
acatatttgtatgaggactcaaacaatgatatctgtgttccggtagctggtttgaagtct
attgacagcttagtccagtttgacaagcccaaatgtcgactgaaggcaaaagatatttat
cctgaacttgtgcgtgactgcgatgacgactccgattttgacaactcaatccgagaagtc
ttgtccgaaattaaatgcaattgttgttctcggcctgtttcactggcgtactatcagtca
cagaaggagattgatattctattgtgtttggattgcttccacgagggtaggtttgttgct
ggtcactctagcttggattttgtcaaagtgagctctatgaaagattatggagatctagac
ggagattcttggactgaccaggaaaccctattgcttctcgagggaatgcaacgctacaag
gaaaactggaatcaaattgctgaacatgttggcaccaagtcaaaagcacagtgcatcctt
cattttgttcgtctgcctttggatggtgcctcgttagacaatattgaacttccaggtgca
tctggtccctcgagttctagcacaggtgaagatcctaacaaatctcattcaattttgaat
gggaatcttgcaggaccaagcactgaaaactttcatcctgatagcaaatttccatttgag
aactgtggaaatccagtaatgtccctggttgcttttctggcatcttctgttggaccgaga
gttgctgcagcatgtgcccatgcatccttggcagcattatctaaggatgatactttaggt
gcaagacgaaacatgactcagatggatggatccacagcaaataatgggaccagtgtagga
agaatgcctggaaagaatggaagtcctcatggagatgttggaaattcgcatcagctaaaa
gatgaaaagtcaggaggacaaggtccacatgatactggaggtgctccattatccactgaa
agtgtaagagctgctgctaaagctggtcttgcagctgcagctataaaatcaaagcttttt
gctgaccatgaagaacgtgagattcaacggttatctgcaaacatagtcaaccatcagtta
aagaggttagagctgaagctgaagcagtttgcagaggtggagaccttgttaatgaaagaa
tgtgaacaattggagaggacaaggcaacgatttactgcagaacgttctcggatgatatct
caacctggttccattcgagtatcccgaccaatgggggtgtctggtgctggtgcagcagtg
gtcagtaacgcaggaaatagtaggcagcaacaagttgtttcagctcctcaacaacaaggt
tttgtttctggatatggaaaccaacaacagatgcatccccaaatgtcatttctgcagcaa
caaggaatgtatggatttgggcctcggctgccactatcagcgatacacccttcctcttca
acacccggtatgtttaatgcatcagcaagttcccagcctgctctcagtcattcaatgctt
agacctgtatctgggacaaaatctggtttaggttga
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