Capsicum annuum (peppers): 107873823
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Entry
107873823 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107873823
03041 Spliceosome [BR:
cann03041
]
107873823
03036 Chromosome and associated proteins [BR:
cann03036
]
107873823
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107873823
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107873823
mRNA cycle factors
Common to processing body (P body) and stress granule
107873823
Spliceosome [BR:
cann03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107873823
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107873823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF6111
Motif
Other DBs
NCBI-GeneID:
107873823
NCBI-ProteinID:
XP_016576244
UniProt:
A0A1U8H732
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Position
1:complement(49739843..49755756)
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AA seq
598 aa
AA seq
DB search
MSWADSVSVAENLAGAPPKSAYVPPHLRNRPSADPPAQASYAGTAAFGNDHGGYGVPNVV
GSRWSGQRNEYQSGFAGGGGRGGGWNSRSGGWDRGRDREVNPFKDADSEVVGEQESSAIN
FDAYEDIPVETSGENVPPPVNTFSDIDLGEAVDENIRRCKYVKPTPVQRHTIPISLAGRD
LMACAQTGSGKTAAFCFPIISGIMRGQFPRPPRPRMAFPLALILSPTRELSCQIHDEAKK
FSYQTGVKVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLALDE
ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRV
GSSTDLIVQRVEYVQETDKRSHLMDLLHAQKENGVHGKQALTLVFVETKKGADALEHWLC
INGFPATAIHGDRTQQEREHALRSFKTGKAPILVATDVAARGLDIPHVAHVVNFDLPNDI
DDYVHRIGRTGRAGKTGLATAFFNENNSSLARSLSDLMQEANQEVPAWLSRFAARSSYGG
KNRRGGGRFGGRDFRRDSSYNRGATTDYYGGGANMSSGYASGGYNASYGAAGVTSAWD
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctgattctgtctctgtagccgagaatctggctggagctccgcccaagtca
gcatatgttccaccacatctgcgaaacagaccttcggctgatcctcctgcacaggcttcg
tatgctgggactgctgcatttggtaatgaccatggtggttatggtgtcccaaatgtggtt
gggagtcgttggagtggtcaaaggaatgaataccaatctggttttgctggtggaggagga
cgtggtggtggttggaatagcagaagtggtggttgggatcgtgggagggatcgggaagtt
aacccctttaaagacgctgatagtgaagtcgttggtgaacaagagagttctgcgatcaat
tttgatgcatatgaggatattccagtggaaacgagcggggagaatgtgccccctcctgtg
aatactttttcagatattgatttaggtgaagctgtcgatgaaaatattaggaggtgcaag
tatgttaagccaacccctgtgcaacggcatactatacctatttcacttgcggggagggat
ttgatggcttgtgcgcagactggttctggaaaaactgctgctttctgcttccccatcata
agtgggatcatgaggggccaatttcctcgacctccacgtccacgtatggcatttcctcta
gctcttattctctccccgacgagggagctctcatgccaaatccatgatgaagctaaaaaa
ttttcatatcaaactggtgtcaaggtggttgttgcctatggtggtgctcctataaaccaa
cagcttcgagaattagagagaggcgtgcatattcttgtagcgacccctggacggttggta
gatttacttgagagagcaagagtctcgttgcagatgataaggtatttggctctagacgag
gctgaccgaatgcttgacatgggttttgaacctcaaataagaaaaatagtgcaacagatg
gacatgcctccgccaggtgtacgacagaccatgcttttcagtgccacttttccgaaagag
attcagagactggcttcagattttctatccaattatatctttttggccgtcggaagggtt
ggttctagcacagatttgattgtccaaagagtagaatatgttcaagagactgacaagaga
agtcacttgatggatctccttcatgcacagaaggaaaatggtgttcatggcaagcaagct
cttacccttgttttcgtggagactaagaaaggagctgatgcactggagcattggctttgt
ataaatggtttccctgctactgctattcatggtgatagaactcagcaggagagggaacat
gctctgagatctttcaaaactggtaaggcaccaatcttggttgcaacagatgtagcagca
cgtggtctcgatatccctcatgttgcacatgttgtcaactttgatctgccaaatgatatt
gatgactatgtgcaccgtattggaagaactggacgagcaggaaaaacaggtttagctact
gccttcttcaatgagaacaattcgtcattggcaagatcactatctgacttgatgcaagaa
gcaaaccaagaagtacctgcatggctttcgcgctttgctgctcgatcctcttatggaggc
aaaaatcgtcgtggtggaggtcgttttggtggtcgtgactttagaagagattcctcttac
aatcgaggtgctactacagactattatggtggtggtgccaatatgagcagtggctatgca
tctggagggtataatgcgtcgtatggagcagcaggcgtgactagtgcgtgggactaa
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