Cellulophaga algicola: Celal_0046
Help
Entry
Celal_0046 CDS
T01404
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
cao
Cellulophaga algicola
Pathway
cao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celal_0046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cao03019
]
Celal_0046
03009 Ribosome biogenesis [BR:
cao03009
]
Celal_0046
Messenger RNA biogenesis [BR:
cao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celal_0046
Ribosome biogenesis [BR:
cao03009
]
Prokaryotic type
rRNA helicases
Celal_0046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
DUF4358
DUF3194
Motif
Other DBs
NCBI-ProteinID:
ADV47404
UniProt:
E6X6A4
LinkDB
All DBs
Position
49223..51124
Genome browser
AA seq
633 aa
AA seq
DB search
MTKFEALGLKKSILDAITDMGFETPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFP
LIQKIDADSRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIYGGASITDQARQIK
RGAQIIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKST
WLFSATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGRDRYPALKRLADTN
PDIFSVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIENK
IGQKFITKNIPTGMEICEIQLYHLANKIKDTEVNAEVETYLPAINKVFEGIDREELIKKV
VSVEFTRFFNYYNKTRDLATSSSGREERGERGERSNNSGEIPTDGSVRYFINVGEKDEYD
WMSLKDFLRDTLEVGQDDIYKVDVKESFSFFNTDAAITPKILETFKDFKVDGRFVNVEIS
SNPGGGGGRGGRDRNRSGGGGGGRDRNRGGGGGGDFKKRKSSSSRDGGYGGGSSEGGGSR
RRSDSSSGSKSGSRSGSRESSSGSKSKRRSGFF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcgttaggccttaaaaagtctatattagacgctattacagacatg
ggatttgaaactccatctgacgtacaagagaaagcaattccaatcttattaggtgacgac
accgacttagtagctcttgcccaaacaggtacaggaaaaacagcagcatttggttttcca
ttaattcaaaaaatagatgcagatagtagaaccactcaaggtttaatattatcaccaaca
cgtgaactttgtttacagattacaaatgaaatgcaatcgtattctaaatacgaaaaaaac
attaatgttgtagctatatatggtggtgcaagtatcactgaccaagcaagacaaattaaa
cgtggtgcacaaattatcgtagcgactcctggtcgtatgaaagatatgatgagccgtgga
ttagttgatatctctaaaattgattattgtattttagatgaagctgatgaaatgcttaac
atgggattctttgaagatatcaaagaaattctttctgatactcctaaagaaaaaagtact
tggttattctctgcaacaatgcctagagaggtagctacaattgctaaaaagtttatgcgt
agtccacaagaaattactgtgggagctaaaaactcaggagcatcaacagtacaacatgaa
tactatgtagttagtggtcgtgatagataccctgcattaaaaagattagcagataccaat
ccagatattttctctgttatcttctgtagaactaaaagagatactcaaaaagtagccgaa
agtcttattgaagacggatataacgccggtgctttacacggagatttaagtcaaaaccaa
cgagatttggtaatgagttctttccgtaaaaaacaaatacaaatattagttgcaactgat
gttgctgcacgtggtattgatgttgatgacatcacacacgtaattaactatcaactacca
gatgaaatagaaacctatactcaccgtagtggtagaactggtagagctggaaaatctggt
atctcaatggtaattattaccagaagcgagcttagaaaaataaaagcaatagaaaataaa
attggtcaaaaattcatcacaaaaaatattcctacaggaatggaaatttgtgaaattcaa
ttataccacttagcaaataaaataaaagataccgaagttaacgctgaagttgaaacttat
ttacctgcaataaacaaagtatttgaaggtattgatcgtgaagagttaattaaaaaagta
gtttctgtagaatttactcgtttctttaattactacaacaaaacaagagatttagcaact
agcagctctggtagagaagaaagaggcgaaagaggcgaaagaagtaataacagcggagaa
atccctacagatggttctgtacgttactttataaacgttggtgaaaaagacgaatacgat
tggatgtctctaaaagatttcttgagagacactctagaagttggtcaggatgatatttat
aaagttgacgttaaggaaagtttttctttctttaatactgatgcagcaattacaccaaaa
attttagagacttttaaagactttaaagttgacggaagatttgtaaatgttgagatttct
agcaacccaggtggtggcggaggtcgtggaggaagagatcgtaaccgcagtggcggtggc
ggcggaggaagagatcgtaatcgcggtggcggtggcggaggagacttcaaaaaacgcaag
tcttcatcatcaagagatggtggttacggaggaggaagttctgaaggaggaggatctaga
agaagatctgattctagctcaggatctaaatctggttcacgtagtggaagtagagaatct
agtagcggtagcaaaagcaaacgtagaagtggctttttctag
DBGET
integrated database retrieval system
